8-1/ My COVID update for epidemiological weeks 7-8 of 2025.
The current COVID wave continues to be the mildest in terms of hospitalizations and mortality since the pandemic began. And it doesn't look like LP.8.1 will break out to boost the current XEC wave.
8-2/ The CDC's wastewater survey shows SARS2 numbers are trending downward in all regions except the Midwest. Note: The CDC normalizes these against the previous year, so they don't give us absolute concentrations. Biobot does, but they haven't published an update in past 2 wks.
8-3/ While ED visits and deaths due to COVID remain low compared to previous waves, influenza is the respiratory virus causing the most ED visits — although we're probably past the peak for flu cases now.
8-4/ And LP.8.1's growth rate is slowing. So, while it may have caused a secondary blip on the current wave, it's not going to create a larger wave than we've just experienced.
8-5/ In other pathogen news, we've got a measles outbreak in TX and NM with over 100 people infected. I'll remind folks that the mortality rate for measles is 0.1-0.3 percent. Young children are especially susceptible.
8-6/ Measles is a particularly nasty pathogen because, unlike COVID-19, measles infection can cause "immune amnesia," severely depleting immune memory cells, leaving children more vulnerable to other diseases that may impact brain health.
8-7/ Research has shown that children who survive severe measles infections have long-term cognitive deficits, including lower IQ scores and impaired executive function. And longitudinal studies have shown vaccinated kids have better educational outcomes. pmc.ncbi.nlm.nih.gov/articles/PMC66…
8-8/ If RFK has his way, we're going to see bigger outbreaks of measles and other infectious diseases in the coming years.
8-10/ Yes, NAb titers drop after infection or vaccination, but they level off, and they remain high enough for the long term to prevent reinfection from the *same* variant. Kucharski argues convincingly that it is novel variants that are getting past our immunity.
8-11/ And finally, here's a neat chart by Biotecnika that maps out the components of our immune system — h/t to @OGdukeneurosurg for posting it!
8-12/ That's it for this update. See you in two epi weeks.
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6-1/ My COVID update for epidemiological weeks 5-6 of 2025.
Biobot's latest wastewater numbers indicate the current XEC wave has receded a bit—but we might see a secondary bump as the numbers level off in West and Midwest, and climb a bit in the South.
6-2/ As US COVID waves go, wastewater numbers indicate this has been on the low side, but we don't really know if the viral shedding of JN.1 and its descendants has remained consistent with previous variants.
6-3/ When it comes to ED visits, hospitalization, and mortality, this has been the mildest wave ever in the US. But...
4-1/ My COVID update for epidemiological weeks 3-4 of 2025.
For the 1st time since 1952, the CDC stopped publishing its Morbidity and Mortality Weekly Report (MMRW)—the last update was on 16 Jan. Is the Trump administration emulating Chinese secrecy practices?
4-2/ Other CDC data pages seem to be up and running, though. Their wastewater numbers seem to indicate the current XEC COVID wave has peaked. Biobot hasn't published an update recently, so I don't have a reality check for CDC's data.
4-3/ Biofire's proprietary Syndromic Trends also shows COVID dropping off as a percentage of detected respiratory viruses. RSV may also be on downward curve, but influenza is rising fast.
2-1/ Happy New Epidemiological Year! This is my COVID update for epidemiological weeks 1-2 of 2025.
Biobot shows wastewater concentrations rising steeply in the South and Midwest. 5 weeks into this wave nat'l ww concentrations have risen at ~2x rate of the previous KP.3x wave.
2-2/ CDC's ww graph shows a higher rise in the Midwest and less so in the South. Of course, the CDC normalizes its numbers against the previous year, so these are relative numbers—not avg SARS2/PMMoV concentrations in CpmL units. Biobot methodology seems more straightforward.
2-3/ COVID hospitalizations are on the rise, but for some reason, the CDC seems to be predicting that the data, once tabulated, will show a drop in hospitalizations in the final week of December. This seems counterintuitive, with wastewater numbers rising so steeply.
52-1/ COVID update for epidemiological weeks 51-52 of 2024.
Here we go again! National SARS2 wastewater numbers are climbing quickly, especially in the NE and Midwest.
52-2/ Of the big 3 respiratory viruses (per CDC), COVID still trails RSV and influenza in test positivity, but has now passed RSV in the number of ED visits.
52-3/ COVID deaths are probably still falling but hospitalizations (based on incomplete data) are rising. And a rise in deaths will follow as hospitalizations rise.
50-1/ COVID update for epidemiological weeks 49-50 of 2024.
As of a week ago (epi week 49), COVID joined Influenza and RSV as a URTI that shows an upward trend in ED visits.
50-2/ The folks at Biobot haven't posted an update for two weeks, so I don't have any good aggregate wastewater numbers for the US (b/c the CDC doesn't publish nat'l data in CpmL units). So, let's zoom in on what's happening in some big city sewersheds. NY State first...
50-3/ Notice that both the Buffalo and the greater NYC metro areas seem to be COVID hotspots. All of NYC's 14 sewersheds show upward trends in SARS2 wastewater concentrations.
Manhattan's two sewersheds below. Wards Island shows the steepest increase of all NYC's sewersheds.
48-1/ COVID update for epidemiological weeks 47-48 of 2024—but since this is the season of URT infections, and COVID-19 is on hiatus, this week's update will also look at the other respiratory viruses that are making us sick at the moment.
48-2/ Today is the fifth anniversary of the COVID-19 pandemic. The symptoms of patient zero, a 55-year-old male, began on 1 December 2019. He wasn't hospitalized until the following 8 Dec. But by the end of Dec, 41 people were hospitalized with a novel form of pneumonia.
48-3/ On 28 Dec 2019, Dr. Lili Ren, a virologist at Union Medical College in Beijing submitted a complete sequence of SARS-CoV-2 to GenBank, but it failed to include the proper annotations & wasn't made public. Not until 10 Jan that a sequence was available on GenBank & GISAID.