Marc Johnson Profile picture
Apr 12 25 tweets 7 min read Read on X
Last month there was an announcement that I thought was a major advancement in world health, but it got little attention.
I thought I would tell you all a little bit about it and why it is so important.
1/25
This breakthrough has to do with HIV, which was a zoonotic pathogen. The progenitor of HIV infects chimpanzees in Cameroon.

No one knows exactly when or how HIV crossed into humans, but the first undisputed HIV patient sample (discovered retrospectively) was from 1959 in what is now the Democratic Republic of Congo.Image
HIV smoldered for decades before becoming widespread in the early 80s.
At the time, being diagnosed with an HIV infection was a death sentence.
There was no real cure (still isn’t) and no treatment. By any measure, HIV was one of the worst diseases of the last century.
3/
nature.com/articles/d4158…Image
Throughout the 80 and 90s many antivirals were developed, but they all were doomed to fail. HIV mutated so fast that it quickly developed resistance to every drug we threw at it.
4/
The breakthrough came in 1996 when HIV researchers such as David Ho found that they could treat HIV if patients received a cocktail of antivirals all at once.
HIV went from being a death sentence, to being a life-long treatable disease.
5/ Image
BTW, David Ho still maintains a very active research lab at Columbia University, which apparently now has all of its NIH grants frozen.

Let no good deed go unpunished.
6/
science.org/content/articl…
Although HIV became treatable in 1996, the world death rate from HIV didn’t start to go down until almost a decade later. Why then?

A big part of the reason was the program PEPFAR, which was launched by George W. Bush in 2003. This program focused on getting lifesaving drugs in the hands of people who needed them.
7/Image
BTW, earlier this year PEPFAR activities were abruptly halted.
8/
nytimes.com/2025/01/27/hea…
While some of this funding has been restored, the future of PEPFAR remains quite uncertain.

9/thinkglobalhealth.org/article/pepfar…
Plus, a lot of NIH grants studying HIV that had foreign collaborators are also being terminated.

10/science.org/content/articl…
Anyway, back to the breakthrough stuff.
For the last few decades, HIV drugs have continued to improve. Patients now take fewer drugs, less often, and with fewer side effects.

11/ fight.org/hiv-medication…Image
However, HIV hasn’t gone away.

People still get infected, and they then require treatment for the rest of their lives.

There are more people living with HIV today than ever before (over 40 million), and the number keeps going up.
12/ Image
Once people are undergoing treatment, they are unlikely to pass on the virus.
The problem is the spread that occurs before people know they are infected.
What we really need is a fool-proof way of preventing people at high risk from becoming infected in the first place.
13/
About 15 years ago groups started working on what is called pre-exposure prophylaxis (PrEP) where people at high risk can take HIV antivirals that could prevent them from being infected in the first place.
14/
However, PrEP was expensive, and not always practical.

What we really needed is a vaccine (we’re not even close), or an effective, long-lasting prophylactic.
15/
Until very recently, almost all of the drugs that blocked HIV targeted one of its enzymatic proteins: RT, IN, or PR.
However, for decades numerous HIV researchers (myself included) studied the process of HIV assembly (CA protein) with the idea that it would be a better target for blocking the virus.
16/
This dream recently became a reality with the development of the drug lenacapavir, a capsid inhibitor where a single dose could last as long as 6 months.
17/
science.org/content/articl…
However, the news got even better last month when it was announced that lencapavir could be used for PrEP with as little as one treatment per year.

That is a treatment that could actually work!
18/
aidsmap.com/bulletin/confe…
That’s the good news.
Please indulge me for a moment to get on my soap box to tell you why we should really care about continuing to fight the war on HIV, even though not that many people are dying of HIV in the US.
19/ Image
The first is simply the forest fire analogy. Forest fires, like pathogens, don’t respect national borders.

HIV started in Africa, but it didn't stay there.

If you live in a forest, it really makes sense to fight the fire before it’s on your property.

20/
But there is a reason that is even more important. Patients with untreated HIV become severely immune suppressed, and immune suppressed patients are breeding grounds for new pathogens and variants.
21/
Using COVID as an example, in early 2021 we had a vaccine, cases were dropping, and it seemed like the pandemic was almost over.
Then began a series of new waves which were each driven by a new COVID variant.
22/ Image
These variants were not the result of gradual changes acquired by circulating lineages.

They were each, wildly different variants.

We are all but certain these new variants were all derived from individuals (presumably immune compromised) with long persistent infections.

23/
Persistent infections are training grounds for pathogens.

People worry about ‘gain of function’ work, but failing to continue treating the 40+ million people in the world living with HIV would be the largest and most dangerous gain of function ‘experiment’ in history.
24/ Image
I’ll get off my soapbox now. Thanks for reading.
25/25

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More from @SolidEvidence

Aug 22
It’s been 2 days, 143 comments, and I’ve been called lots of bad names.
Here’s what I learned about protein based Novavax (NV) vs mRNA COVID vaccines.
1/
The pretty universally agreed on difference is that Novavax has fewer side effects.
If you have bad vaccine reactions, it is probably the better choice.
2/
There are other differences too. NV is protein based, so the immune response is antibody focused, while the mRNA is response is broader and produces both antibodies and CTLs.
3/
Read 11 tweets
Aug 17
It’s been 2 years since BA.2.86 first appeared (and I’m give the variant update to SAVE on Monday), so I thought I would do a little summary about this era of SARS-CoV-2 evolution.
1/ Image
SARS-CoV-2 lineages come up with new constellations of mutations in 3 main ways.
1. Sequential acquisition of mutations during normal circulation.
2. Recombination.
3. Sweeping new lineages (almost certainly from persistent infections).
2/
BA.2.86 was one of the sweeping changes. When it first appeared in Israel I thought it was a persistent infection, most of which never spread. Then it appeared in Denmark too.
3/
Read 13 tweets
Aug 16
I read @EricTopol's Super Agers book while we were traveling this summer.

Wow. That was the most rigorous (>1,500 refs), comprehensive, and bullshit-free book on health I’ve ever seen.

Too much info for a thread, but I’ll mention some highlights.

1/simonandschuster.com/books/Super-Ag…
Fact 1, it’s not just genetics.
@EricTopol spent years sequencing the genomes of the ‘wellderly’ (people over 80 that have never had a chronic illness) to find the genes associated with healthy aging.
Their conclusion – there wasn’t much there. It’s not just genetics.
2/
Fact 2, intake matters.

1. Drinking coffee has real health benefits (who knew?)
2. Drinking alcohol really doesn’t (bummer)
3. Ultra Processed Foods (UPFs) are REALLY bad for you. It goes well beyond being empty calories.

3/
Read 10 tweets
Jul 18
A 'new' Texas cryptic lineage popped up this week.

We've got another traveler.

1/ Image
This one was from a Texas sewershed from July 1 with a population of 1,000,000, which means it had to have been one of the Dallas sewersheds.

2/ Image
It's a little surprising we found this one because the sequence coverage was kind of spotty.

It popped up in one of our screens because it had a few mutations that we've only seen in cryptics so far.
3/ Image
Read 11 tweets
Jul 9
I've always found this frustrating.

You or your child has a respiratory infection. It's not flu or COVID. Your doctor can only tell you, 'you have a virus'.

Could it be a little bit more specific?

We hope to help answer this question, non-invasively, and for free.
1/ Image
Contrary to my prior assumptions, many of the most common pathogens are not everywhere, all the time. They occur in discrete waves, often nationwide.

I wrote about this recently with Rhinoviruses, the most frequent cause of the common cold.

2/
As promised, we've now added a standalone readout of the rhinoviruses on our wastewater dashboard.

3/
lungfish-science.github.io/wastewater-das…Image
Read 10 tweets
Jun 29
This is cool. I was poking around at the Rhinovirus (common cold) data and realized that my perception about these viruses was completely wrong.
1/ Image
Rhinoviruses (Rhino is Greek for nose) are picornaviruses in the enterovirus genus (same as polio). Enteros can be GI or respiratory (or both), but Rhinos are usually respiratory, and are the main cause of the common cold.

2/cdc.gov/rhinoviruses/a…
There are 3 species of Rhinoviruses (A, B, and C), and over a hundred antigenically distinct serotypes.

3/en.wikipedia.org/wiki/Rhinovirus
Read 16 tweets

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