Viruses like HIV and CMV don’t just evade immunity - they reshape the host from within.
One way they do it? By targeting the cell’s ability to make proteins.
SARS-CoV-2 belongs in this group. It interferes with how ribosomes are made and used.
What that means - and why it matters 🧵
Viruses like HIV are known to:
block protein translation
rewire cell signaling
change cellular behavior without altering DNA
SARS-CoV-2 does the same.
Its Nsp1 protein hijacks ribosomes - the core machinery that turns RNA into protein.
Ribosomes are molecular machines that translate genetic instructions (mRNA) into proteins.
Without them, a cell can’t repair itself, send immune signals, respond to stress or survive infection.
SARS-CoV-2 hits ribosomes on two fronts:
Nsp1 blocks existing ribosomes - shuts down translation
Nsp1 blocks formation of new ones - interferes with rRNA processing in the nucleolus
This causes both acute and lingering disruption of protein synthesis.
A 2024 study (Yerlici et al., Cell Reports) showed that Nsp1:
enters the nucleolus
binds to pre-rRNA
prevents its processing and export
So this stalls ribosome production - without needing to change the cell’s transcriptional program.
The result? A drop in protein-making capacity.
The cell may survive, but it can’t make enough proteins to repair, signal, or defend itself.
Homeostasis breaks down.
Stress builds up.
Regeneration falters.
This can lead to:
chronic fatigue
inflammatory overload
tissue repair failure
immune exhaustion
And it gets deeper. Ribosomes shape gene expression.
They’re not passive tools - they influence which mRNAs get translated, and when.
So disrupting ribosome function selectively silences parts of the genome without touching the DNA.
A gene can be “on” - but if its mRNA doesn’t get translated, the protein never appears.
This creates functional shutdown without any mutation or epigenetic change.
It’s quiet, but powerful.
The virus reprograms the cell by shifting what gets built - and what doesn’t.
More consequences of impaired ribosome function:
misfolded proteins and ER stress
faulty signaling proteins
delayed cellular response to stress
disrupted communication between organelles
Systems begin to desynchronize - even without structural damage.
HIV behaves similarly:
blocks translation of HLA and other key proteins
reprograms epigenetic marks
drives immune exhaustion and senescence
CMV and EBV also alter host translation to favor their survival - at the host’s expense.
SARS-CoV-2 clearly fits this class.
It’s not just an acute respiratory virus.
It actively rewires protein synthesis - the core of how a cell adapts, regenerates, and defends itself.
That leaves a lasting footprint on the body.
One consequence may be cancer risk:
unbalanced translation of oncogenes
impaired tumor suppressor pathways
chronic stress and inflammation
This creates a long-term environment that favors cellular transformation.
Ribosome disruption has system-wide effects - and they strongly resemble the profile of long COVID.
That may not be a coincidence.
If a virus throws off ribosomal balance, it can affect multiple organ systems at once.
What ties them together?
A cell that can’t make the right proteins at the right time.
Translation slows, stalls, or skews - and the system starts breaking down.
No scar tissue, no visible damage - just dysfunction.
Long-term effects of SARS-CoV-2 may not stem from a single “injury.”
They may result from disrupted control systems - like protein synthesis.
Time, stress, and the body’s own compensations do the rest.
This mechanism isn’t brand new - but it’s been overlooked.
It may help explain why some symptoms last for months after infection ends.
And why they can affect so many systems at once.
This new Nature Immunology study is wild.
Turns out, CD8+T cells can go into an exhausted-like state without any chronic infection.
No persistent virus. No repeated antigen.
Just broken mitochondria.
Complex III.🧵
Quick recap: Complex III is part of the mitochondrial electron transport chain.
It pumps protons (ATP), passes electrons (metabolism), and makes ROS (signaling).
The authors knocked it out in T cells. What happened?
The T cells couldn’t divide, couldn’t form memory, and looked dysfunctional.
Then they added AOX - a sea squirt enzyme that restores electron flow without making ROS or pumping protons.
So: respiration back, but no ROS, no ATP from Complex III.
SARS-CoV-2 targets mitochondria. That’s not collateral damage - that’s a strategy.
A July 2025 review in Redox Biology brings together striking evidence of viral mitochondriopathy in COVID-19 and Long COVID.🧵
It shows how SARS-CoV-2 reprograms host cells by attacking their energetic and immunologic core: the mitochondria.
Here’s what that means:
What the virus does to mitochondria:
Inhibits oxidative phosphorylation (OXPHOS) = less ATP
Increases ROS and triggers mitochondrial DNA (mtDNA) release
Disrupts MAVS - the antiviral signaling hub
Switches metabolism to aerobic glycolysis (Warburg effect)
Blocks mitophagy = damaged mitochondria accumulate
Triggers pyroptosis, apoptosis & DAMP release
What if the brain doesn’t just suffer from what “leaks in” - but from what no longer gets in?
A 2025 Nature Medicine study reframes brain barriers as dynamic gates - and may help explain post-COVID cognitive symptoms.🧵
Brain barriers are not passive walls.
They’re regulated, selective gates - deciding which proteins from blood enter cerebrospinal fluid (CSF), and under what conditions.
This study profiled 2,304 proteins in paired CSF/plasma samples from over 2,000 individuals!
The key output: CSF/plasma ratio per protein - a readout of transport, permeability, and barrier regulation.
Results challenge the default assumption that high CSF/plasma = “leak” = bad.
Some proteins are meant to enter the brain. Their presence can be protective.
Long COVID can injure the brain - and persistent autoimmunity could be a major driver.
A study links persistent AT1 receptor autoantibodies (AT1-AA) with neuroaxonal injury and cognitive symptoms.
Here’s what it means🧵
The study focused on post-COVID patients with neurological symptoms like brain fog, memory issues, or fatigue.
They found:
Elevated AT1-AA in serum and cerebrospinal fluid (CSF)
Correlation with neurofilament light chain (NfL), a marker of axonal damage
Signs of a compensatory immune response - often insufficient
What are AT1-AA?
Autoantibodies that act as agonists at the angiotensin II type 1 receptor (AT1R), which mediates pro-inflammatory, pro-thrombotic, and vasoconstrictive signals.
Unlike typical antibodies, these lock the receptor in an “always on” state - driving inflammation and oxidative stress.
SARS-CoV-2 is not just another respiratory virus.
It has evolutionarily selected features that actively manipulate innate immunity - similar to viruses like HIV, EBV, or CMV.
A new study in iScience shows how.🧵
What are formyl peptide receptors (FPRs)?
They’re innate immune sensors on neutrophils and other immune cells.
They detect signs of infection or damage.
Key types
FPR1: strongly pro-inflammatory
FPR2: dual, context-dependent
FPR3: poorly understood, but active in viral immunity
The new study tested 80 synthetic peptides from the Omicron spike protein.
It found:
10 activated FPR1
9 activated FPR2
30 (!) activated FPR3
Several triggered immune responses in primary human neutrophils
New study identifies 3 cognitive phenotypes in Long COVID - and raises a troubling question about insight and impairment.
123 adults
21 months post-COVID
All with some persistent cognitive complaints🧵