beowulf888 Profile picture
Sep 23 11 tweets 5 min read Read on X
38-1/ My pathogen update for epidemiological weeks 35-38. All COVID this update.

Biobot's wastewater numbers and the CDC's NWSS seem to both indicate that the current wave has peaked. Of course, I thought that was the case 4 weeks ago, but the numbers spiked up again. Image
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38-2/ Notice that the CDC's NWSS data shows the current wave is nearly as high as our 2024-25 winter wave. I suspect that's because they're normalizing their data against the previous year's numbers. OTOH, ED visits are higher for this wave than the previous one... Image
38-3/ If Biobot's CpmL/PMMOV numbers are a better indicator of transmission than NWSS data, I'd have to conclude that XFG.x variant is more virulent than XEC.x in that there is a higher rate of ED visits this current wave. But this is not reflected in hospitalizations or deaths. Image
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38-4/ You're welcome to disagree with me—but following this line of reasoning, I would conclude that, even though XFG.x is getting past our NAbs and we're getting sick, our secondary B-cell and T-cell defenses are doing an excellent job of warding off serious illness.
38-5/ BioFire's proprietary syndromic trends tool also shows the current COVID wave is past its peak. And their COVID curves resemble the CDC's NWSS curves. I'm not sure how they derive their data, though. Notice there's a *slight* uptick in RSV and flu. Image
38-6/ XFG (aka "Stratus") and its descendants were the primary driver of our summer wave. Early on, it looked like it would be an NB.1.8.1 ("Nimbus") wave, but XFG left it in the dust. Image
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38-7/ And although XFG.x is the dominant variant in North and South America, Europe, and Africa... Image
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38-8/ ...but Asia and Oceana belong to Nimbus. I don't remember a pattern like this since 2021 when the VoCs Beta, Gamma, and Lambda each dominated a region of the world. Image
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38-9/ Re: ED visits, demographic breakdowns are no longer up on the CDC website, but @RajlabN dug into their data and gave us this. The 0-4yo age group is seeing the highest rate of ED visits this wave. Seems like Brainworm restricting COVID vaccines to very young was a bad idea. Image
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@RajlabN 38-10/ That's it for this update. See you in four epi weeks—unless something important or interesting happens in the next few weeks. /end
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More from @beowulf888

May 21
20-1/ My pathogen update for epi weeks 17-20 of 2025.

X seems to be shadow-banning my posts ever since I suggested Musk's erratic behavior was due to his ketamine abuse. Oh well. I'll continue to post here. Let me know if you're seeing them. On to the update...
20-2/ US SARS2 wastewater concentrations have dropped to the lowest interwave levels since June 2021. They haven't dropped to June '21 levels yet, but they're continuing to fall everywhere except the West—but the West is at lower levels than the previous two interwave gaps. Image
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20-3/ As of the beginning of May COVID hospitalization rates were the lowest they've been since the start of the pandemic. But SARS-CoV-2 is still circulating. Patients are still testing positive for COVID, while the positivity rates for influenza and RSV have fallen. Image
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Read 16 tweets
Apr 22
16-1/ My pathogen update for epi weeks 15-16 of 2025.
Per Biobot, national SARS2 wastewater concentrations as of 12 April were almost down to the levels of post-Omicron interwave gaps. I suspect they're there now. Image
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16-2/ If patterns hold, SARS2 should maintain this low level of circulation for a few weeks before climbing again in an upward curve. Though previous summer peaks have been late Aug/early Sept, I wouldn't be surprised to see the next wave peak in July or early Aug. We'll see.
16-3/If the trends hold, COVID-19 weekly mortality rates and ED visits will drop below levels of previous interwave gaps in the next few weeks. COVID-19 is still holding on to 14th place as most common cause of death, but I wonder if it won't drop off the top 15 by the end of 25. Image
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Read 14 tweets
Apr 7
14-1/ My pathogen update for epi weeks 13-14 of 2025.

As of 28 March, we're not down to previous interwave SARS2 circulation levels yet—except for the Western region of the US. But the rest of the US should be there by the 3rd week of April. Image
14-2/ COVID hospitalizations, ED visits, and deaths all tracking downward as of two weeks ago. Image
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14-3/ Flu season is receding as well. As with most previous seasons, we've got a long tail of influenza B cases, but they're nowhere near the numbers of influenza A cases. Image
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Read 15 tweets
Mar 25
12-1/ My pathogen update for epi weeks 11-12 of 2025. The XEC COVID wave hasn't fully receded yet. Biobot shows that as of March 15, SARS2 wastewater levels haven't fallen to previous interwave gaps except for the Western region of the US. Image
12-2/ The CDC's ww numbers indicate a long tail for this wave, but it shows the West and NE back to interwave levels. These numbers are all normalized to the previous year's numbers, so I don't know if this long tail may be an artifact of the way they normalize. I trust Biobot. Image
12-3/ If there is a long tail, it's due to the LP.8.1x brood that continues to gain traction against XEC.x. I expected the LP.8.1x's to top out at about 30%, but CoV-Spectrum shows they've reached 50%. O/c, there were only 3 LP.8.1x descendants a month ago. Now there are 19. Image
Read 13 tweets
Mar 11
10-1/ My pathogen update for epi weeks 9-10 of 2025. I'm renaming this a "pathogen update" because SARS-CoV-2 is fading into endemicity. That doesn't mean that COVID-19 won't remain a public health problem, but we've got a bunch of other pathogens that we need to keep our eye on.
10-2/ But speaking of COVID-19, the current wave is receding. Both the CDC's wastewater activity levels and Biobot's wastewater concentration chart show a downward trend in all regions of the US, Image
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10-3/ This XEC wave had the lowest rates of hospitalizations, ED visits, and deaths of any variant wave so far (at least for the US). And rates of test positivity for RSV and Influenza outpaced COVID this respiratory season. Image
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Read 13 tweets
Feb 24
8-1/ My COVID update for epidemiological weeks 7-8 of 2025.

The current COVID wave continues to be the mildest in terms of hospitalizations and mortality since the pandemic began. And it doesn't look like LP.8.1 will break out to boost the current XEC wave. Image
8-2/ The CDC's wastewater survey shows SARS2 numbers are trending downward in all regions except the Midwest. Note: The CDC normalizes these against the previous year, so they don't give us absolute concentrations. Biobot does, but they haven't published an update in past 2 wks. Image
8-3/ While ED visits and deaths due to COVID remain low compared to previous waves, influenza is the respiratory virus causing the most ED visits — although we're probably past the peak for flu cases now. Image
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Read 13 tweets

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