Steve Massey Profile picture
Oct 30 8 tweets 3 min read Read on X
Great critique by Billy of a preprint purporting to show a "FCS" in a novel coronavirus from Brazil

I would add that

1) no evidence is presented that the cleavage site is cleaved by furin.. 🧵

In addition, cleavage occurs after secretion into the culture medium, which seems inconsistent with furin as responsible for cleavage during infection

Whether it actually undergoes cleavage as part of its cell entry mechanism is unclear Image
2) The new CoV (BRZ CoV) is claimed as a beta-CoV. No whole genome tree is presented, to compare with the other CoV genus's

The RdRp tree shows its placement in the beta-CoVs is uncertain. Also that the lineage is not novel, as it is highly similar to 2 existing sequences Image
3) It is claimed that the cleavage site is at the S1/S2 junction. As noted by Billy this is incorrect, given that it is 200 amino acids away from the SARS2 FCS (which is at the S1/S2 junction)

This is confirmed by the larger size of BRZ CoV's cleaved spike Image
4) No genome sequence is provided, or alignments

The find has been hyped in the media, but the authors have not provided the relevant data that would allow scrutiny of the claims

Is this deliberate ? Maybe Proximal Eddie knows Image
Holmes has a cozy relationship with 'higher ups' in the British establishment

It may be no accident that the Daily Mail was chosen to publish a breathless article on the new coronavirus and its "FCS"

x.com/i/grok/share/r…
5) The claimed large size of the BRZ CoV spike (1479 aa compared to 1273 aa in SARS2) seems dubious. Take a look at the genome structure below, it shows that the spike gene overlaps ORF1b. Odd Image
All in all, little substance to support the claims

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More from @stevenemassey

Oct 7
A link between MERS-CoV pathogenicity and epithelial sodium channel (ENaC) was described in a 2016 proposal by Luis Enjuanes, collaborator of Baric h/t @USRightToKnow

Coincidentally, the human α-ENaC furin cleavage site (FCS) is identical to that of SARS2 🧵
2/ As far back as 2009 it was known that SARS1 spike and E proteins interacted with human ENaC, modulating its activity leading to fluid buildup in the lungs

Fluid buildup (pulmonary edema) is a key symptom of both SARS1 and SARS2

journals.physiology.org/doi/full/10.11…
3/ This means that ENaC, and its regulation by coronaviruses, was of interest to coronavirologists

Recent work has confirmed interactions between SARS2 and human ENaC

cell.com/biophysj/fullt…
Read 6 tweets
May 7
The GOF Executive Order includes no clear ban on US-based GOF research, but kicks the can down the road

Weak gruel unfortunately at this stage, vested interests seem to have inserted themselves 🧵
whitehouse.gov/presidential-a…Image
@thackerpd @emilyakopp @HansMahncke @ban_epp_gofroc @lewiskamb 2/ While executive focus on GOF is to be welcomed, unfortunately this Executive Order (EO) does not deliver a ban on US GOF research. While it bans funding of dangerous GOF in countries of concern, why does it not do the same in the US ? Why not a blanket ban ?
3/ There is also a ban on GOF in countries with inadequate oversight, but presumably that allows GOF in countries that do pass the oversight test (and what that test is remains to be described)
Read 17 tweets
Apr 16
We received an (indirect) response from UNC regarding our preprint outlining evidence for a potential lab leak of SARS2 at UNC

UNC asked GISAID to tell us to remove our preprint

We did this, but have now put up an updated version 🧵
zenodo.org/records/151721…
2/ @quay_dr uploaded our original preprint on March 26

We identified 7 'frozen' SARS2 sequences from UNC, that were basal to other sequences generated at the same time. These could represent early SARS2 strains that had escaped from a research facility

3/ Before uploading the preprint, we sent an email to Dirk Dittmer and Melissa Miller of the Clinical Molecular Microbiology Laboratory, UNC Hospital, regarding the 7 anomalous sequences we had detected from their sequencing facility

However, they did not respond Image
Read 15 tweets
Mar 25
Steve Quay @quay_dr and myself have published evidence for a potential lab leak of SARS2 at the University of North Carolina (UNC)

7 genome sequences collected by UNC in 2020-21 are basal (ie 'frozen') indicating a potential lab origin 🧵
zenodo.org/records/150833…
2/ The 7 sequences were collected from Jun 2020 to Jan 2021 and submitted by Dr Dirk Dittmer of the Clinical Molecular Microbiology Laboratory, UNC Hospital

Puzzlingly, they show strong similarities to the SARS2 reference sequence Hu-1, sampled in Dec 2019 Image
3/ On the dates the 7 sequences were collected, they should have accumulated more SNVs than they actually possess, according to the SARS2 molecular clock Image
Read 15 tweets
Mar 15
I've published a paper on the emerging phenomenon of 'frozen' virus genome sequences, and how they can indicate lab leaks

"Frozen' virus genome sequences are generated from recent outbreaks, but show surprising similarity to historic strains 🧵
mdpi.com/2076-2607/12/1…
2/ The classic example is 1977 'Russian' H1N1 Flu, which re-emerged after having gone extinct in the 50s. Genomic sequences were identical to strains from the 50s, indicating it had been stored for > 20 years before release
nature.com/articles/27433…
3/ An alternative scenario of viral host persistence / latency seems unlikely

A clue to its non-natural origin was that only younger people got sick, while older people were immune. This is because the latter had been exposed to H1N1 in the 50s and before
pmc.ncbi.nlm.nih.gov/articles/PMC23…
Read 19 tweets
Mar 12
It has been reported German Intel has assessed that COVID19 originated via a lab leak

Swiss paper NZZ reports that our discovery of a MERS-related infectious clone with a chimeric spike from Wuhan sequencing datasets was considered by German Intel 🧵 Image
2/ The study by @humblesci @Daoyu15 @BiophysicsFL @ydeigin @quay_dr and myself was published last year and demonstrated unreported GOF experimentation on novel MERS-related coronaviruses in Wuhan prior to the pandemic
fortunejournals.com/articles/disco…
3/ Concerningly, we found evidence that a MERS spike (with FCS) was inserted into a HKU4r-CoV backbone, likely enhancing transmissibility in human cells, as the RBD is expected to have a high binding affinity for the hDPP4 receptor

Here is a thread on the preprint version of the paper:
Read 7 tweets

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