Enormous Midwestern outbreak of H5N1 that so devastated poultry in Ohio & Indiana over past few months is whole NEW genotype, ⭐D1.3⭐ that USDA & CDC just "forgot" to tell us about! (despite HUMAN case)
New D1.3 has swapped American NA of D1.1 for N1 from A3.
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Further to above Post...
Hogvet51 sounds delighted too by this excellent information sharing about D1.3 by USDA & CDC.
Without him & Henry Niman, I wouldn't have know about this...
@JusDayDa
@MegCattell
@KinCONN
@RanuDhillon
@AbraarKaran
@BrusJulian 2/3
Finally got around to testing some Flu-A/B RAT's readily available in UK/EU using A/Texas/37/2024 (B3.13) recombinant Nucleoprotein from Sinobiological, which is nearly identical (99.5%) to D1.1 NP (e.g. 52H/Y difference).
More commentary tomorrow...
@BrusJulian
@RickABright
Influenza Nucleoprotein (NP) in context of RAT detectabilituly: how do worldwide H5N1 virus NP's compare to current US ones?
pBLAST comparing some NP's of *human* H5N1 cases in past decade to B3.13 (more details of what's being compared later).
@BrusJulian
@RajlabN
@HNimanFC 1/x
Below is rest of H5N1 NP sequence lemgth, and here is where/when samples were from:
0) Texas B3.13 (WYN03023.1) 1) Chile 2023 (B3.2?) 2) China 2010 3) China 2015 4) India 2021 5) Cambodia 2013 6) Bangladesh 2011 7) Vietnam 2012 8) Egypt 2014 9) Hong Kong 10) Canbodia 2011
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Analysis:
Chile 2023 clearly stands out as fellow "New World" sequence to B3.13, while all the "Old World" H5N1 sequences share some near-universal COMMONALITIES -
G34S
K77R
T373A & S377N
N450S
52Y is "standard" (e.g. in D1.1 too) - B3.13 is the odd in one out in having H
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