New study out of Amsterdam UMC asks a question most Long COVID imaging papers don’t tackle at once - does inflammation in the brain actually track with how well different brain regions talk to each other? 45 people, roughly 27 months post-infection!🧵
TSPO PET is a scan that lights up wherever immune cells in the brain (microglia) are activated - basically a map of where inflammation is happening. This version is fully quantitative, with blood sampling during the scan, not a shortcut estimate.
The second scan, resting-state fMRI, measures which brain regions sync up while someone just lies there doing nothing.
They split people into two separate pairs of groups
high brain inflammation on PET vs not (10 vs 35),
ongoing cognitive complaints/fatigue vs not (31 vs 14).
Then they checked whether network connectivity looked different across each pair.
The authors propose
First - brain inflammation tracks with weaker connectivity in the visual and attention networks - and between the brainstem and a control network. Second - the complaints (fatigue, brain fog) track with weaker connectivity in the default mode network (the network active when your mind wanders, reflects, remembers) - and between the thalamus and motor cortex.
So inflammation drives one pattern of problems, the complaints themselves drive a different pattern. Two independent lines of evidence that happen to converge on the same brain regions.
But every single one of the 10 people with high brain inflammation also had ongoing complaints. Zero people had high inflammation without complaints. Maybe the inflammation group is a subset of the complaints group - not two separate observations.
The authors admit this in their discussion, calling it shared variance.
This is a group-level tendency, not something usable for an individual person.
There’s also no non COVID comparison group - all 45 people had COVID. The comparison is only COVID with complaints vs COVID without complaints.
A single snapshot in time. 27 months is a longer window than most studies in this space, which deserves credit - but it’s still different people scanned at different points, not the same brains followed over time.
In the discussion, the authors bring up Alzheimers and MS as precedent for chronic inflammation eventually damaging networks and leading to neurodegeneration.
Yes, this connects to something bigger. The brainstem disruption here lines up with other recent work - one find reduced brain energy use in a similar region (limbic system, smell-processing areas, brainstem), another raised doubts about whether the brainstem itself is even a clean, unaffected reference. Three different imaging techniques, all circling the same small piece of anatomy.
It’s exactly the region current models point to as the starting point for Parkinson’s disease and related synucleinopathies. Three different machines, three different things being measured, all converging on the region you’d expect to light up first in an early synucleinopathy - not generic neurodegeneration.
And it’s a pattern getting harder to wave off as coincidence. The closest viral parallel is HIV. Chronic immune activation in the brain rewires how networks function long before anything resembling classic neurodegeneration shows up.
This is another real signal in a condition the system still often frames as psychogenic. There’s too much signal now to keep operating without prevention. @szupraha @ZdravkoOnline @adamvojtech86
Visser at al., Decreased functional connectivity in post-COVID syndrome patients with high neuroinflammatory activity. sciencedirect.com/science/articl…
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A new persistence study tracks SARS2 in Syrian hamsters for the longest span published so far. A full year after infection. The question is simple - does the virus persist in the body after the acute phase? The answer is more precise than yes/no.🧵
A year is roughly half a hamsters typical lifespan - the animals were also infected as young adults (8-10 weeks), so persistence was tracked across essentially their whole adulthood.
Tissue persistence is one of the leading hypotheses for the origin of long COVID - the virus never fully clears, sits somewhere in a reservoir, keeps the immune system irritated.
Three different things have to be kept apart - persistent RNA, persistent protein, and live, replicating virus. These aren't synonyms.
A new mouse study gives us a hard close-up of something long COVID data keeps hinting at.
SARS2 gets into the brain, clears out within a month - and the damage it leaves behind doesn’t just persist, it keeps growing. The virus clears out and leaves scorched earth behind it🧵
K18-hACE2 mice, Delta, tracked at 6/14/30 days post infection.
Day 6 - virus peaks in the brain (both N-protein and infectious particles).
Day 14 - only half the animals still have it.
Day 30 - undetectable.
The classic pattern - acute neuroinvasion, then cleanup.
This K18 model inflates the magnitude of the neurological hit.
But what doesn’t rest on the inflation is the shape of the finding - and that’s the part that matters.
Two variants that went on to dominate the world - BA.2.86 and its descendant JN.1 - replicate worse in the airways than the variant they displaced.
But better in the small intestine.
New work from HKU shows viral fitness isn’t a single number - it’s a trade off between tissues.🧵
We each carry a different mix of past infections and vacc. That immune background masks what a variant can intrinsically do. The authors got around it by testing replication in tissue models with no immune system - where only the virus’s own biology shows through.
Four models. Ex vivo explants of human bronchus and lung, airway organoids, proximal intestinal enteroids duodenum, the start of the small intestine, and Caco-2, a tumour cell line standing in for the large intestine. Six variants, from WT to JN.1.
COVID & amyloid.
Since 2022, a growing body of research has taken one possibility seriously - that amyloid - proteins refolded into clumped, degradation resistant aggregates plays a role in the pathology of COVID/long COVID. This isn't a fringe idea. At least five independent labs stand behind it, plus a review in Lancet Neurology.🧵
Two 2022 papers laid the groundwork. Nyström & Hammarström found seven amyloidogenic segments within the spike protein. Charnley identified peptides from SARS2 that self-assemble into structures toxic to neurons. Both cleared the formal bar - the dye ThT, Congo red with birefringence, and fibrils under the microscope. That's the threshold the field sets for calling something amyloid.
Since then, follow ups have accumulated across groups. Larsson 2023, cross-seeding with prion and Aβ, Sanislav 2024, polymorphs and neurotoxicity, the Hansmann branch α-synuclein, Aβ, and Follmer/Gemignani, α-synuclein and Parkinson's. The signal converges from several independent directions.
Interferon works against SARS2. In these experiments it knocks infection down by 80 to 96%.
But it doesn’t cut evenly. What it leaves standing is the spread that runs by a route it can’t reach.
A new NIAID paper shows what that did to spike evolution🧵
The virus has two options for getting into the neighbouring cell.
Package itself into a virion, swim out, enter again. Out there it’s exposed to everything waiting for it.
Or fuse the infected cell with its neighbours into one multinucleated cell - a syncytium - and never go outside at all.
Interferon induced defence proteins mostly target the first route. Entry of an incoming virion.
A membrane fusing between two cells isn’t an incoming virion.
One route gets choked hard, the other much less.
SARS2 doesn’t have to infect the brain to damage it. A new review in Frontiers Neurol. lays out how - and builds the whole thing on a cell long COVID coverage almost never mentions.
The mast cells in your meninges.🧵
Most post-mortem brains don’t show the virus productively infecting neurons or microglia. So where’s the damage coming from? The answer the review builds toward - it isn’t replicating virus driving this. It’s spike protein that stays behind.
The most solid, independent part of the review story? Swank 2023. Full-length spike in the plasma of 60% of people with PASC, up to 17 months out - nothing in acute patients in week one. Peluso 2024. Persistence past 14 months, with levels tracking markers of immune activation.