PhD student in Infectious Disease Dynamics (@lshtm, @cmmid_lshtm) funded by @MRC_LID. Work: measles, dengue and EVD transmission dynamics. Bit of a music nerd.
Jan 19, 2021 • 5 tweets • 3 min read
🚨🎉New preprint (and R package #rstats) out in @F1000Research, with @AdamJKucharski and @sbfnk : We developed the package o2geosocial to reconstruct who-infected-whom from routinely collected surveillance data. f1000research.com/articles/10-31 (NOT YET PEER REVIEWED) 1/5
The objective of o2geosocial is to make the most of epidemiological data when genetic sequences are not available, nor informative. It uses the date of symptoms onset, location, age and genotype of the cases to reconstruct who-infected-whom #CRANCRAN.R-project.org/package=o2geos… 2/5
