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ChristofferFlensburg Profile picture
ChristofferFlensburg
@CFlensburg
Cancer genomics. Bioinformatics. Visualisation that makes sense. Check out superFreq, cancer exome analysis: https://t.co/pwPs5XJRUX
Jul 31, 2018 • 10 tweets • 5 min read
SuperFreq: Integrated mutation detection and clonal tracking in cancer biorxiv.org/content/early/…

If you want to use: github.com/ChristofferFle…
I've developed and used this the last 4+ years, and now finally out! 🎉

Let me make a thread (or tree?) from here. What is superFreq?
It analyses cancer exomes, especially geared for multiple matched cancer samples.
- calls somatic SNVs
- calls CNAs
- calls clones and phylogeny

as well as quality of life:
- annotates variants (effect, dbSNP, ExAC, COSMIC)
- lots of plots: results and QC