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James McInerney Profile picture
James McInerney
@jomcinerney
Chair in Evolutionary Biology and Leverhulme Research Fellow. Open Science Advocate. Emigrant. #Python Machine learning. #Pangenomes 🇮🇪 #firstgen He/Him
Feb 16, 2022 • 25 tweets • 11 min read
Here is a short tweetorial on "Where do maximum likelihood numbers for phylogenetics come from?" I show the calcs for DNA, and provide some python code. I'm just using python as a calculator, but if you want, type it into a python file as we go along. PLS RT (E&OE) 1/24 So, first of all, do some python housekeeping. numpy, scipy and matplotlib are standard - they need to be installed on your machine, if you're not sure, pls ask your local python guru how to do this. The rich library is just to be fancy. 2/24