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Mikhail Dozmorov Profile picture
Mikhail Dozmorov
@mikhaildozmorov
Associate professor, @VCU. Bioinformatics, 3D genomics, Computational Biology, Cancer, Single-cell technologies. Interested in programming, machine learning
Nov 24, 2022 • 8 tweets • 6 min read
excluderanges is a Bioconductor data resource providing sets of problematic genomic regions (previously, "blacklisted"). It covers six organisms, 12 genome assembles, and new exclusion sets for mouse mm39 and human telomere-to-telomere (T2T) genomes. doi.org/10.1101/2022.1… ImageImageImageImage Most exclusion sets from ENCODE, UCSC Genome Browser, GitHub lack curation methods. We uniformly processed and annotated 84 exclusion sets and made them available on AnnotationHub and via the BEDbase.org API. Tutorial at dozmorovlab.github.io/excluderanges/