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"...it is crucial that we establish the pathways involved in the different stages of the inflammatory response to SARS-CoV-2 and determine the contribution of these pathways to ultimate disease outcome."
1/ Possible pathways based on knowns
Stage I - Viral entry into upper airway

IFN-λ response restricts viral replication to upper airway
1) Virus cleared early
2) Virus kept in check until seroconversion (~7-10 days)
Asymptomatic or mild outcome.
ncbi.nlm.nih.gov/pubmed/31821443
2/
Stage 2 - Virus enters lower airway

Could occur 2 ways:
1) Directly, through inhalation
2) If patient has IL-17A mediated inflammation in airway (thread) at time of infection, then IFN-λ⬇️- virus can replicate to higher titer
jimmunol.org/content/201/8/…
3/
If titer low, virus kept in☑️by innate immune response until seroconversion - mild/moderate disease

STAGE 3
If titer high, CoV-2 replicates in type II alveolar pneumocytes, NLRP3 inflammasome triggered

ncbi.nlm.nih.gov/pubmed/?term=2…
sciencedirect.com/science/articl…
4/ Virus inhibits INF response, including INF-λ


Virus replicates relatively unchecked
5/
Macrophage recruited to/expanded to lower airway become MH1 activated & inflammatory cytokines produced. Neutrophils recruited.

A major mediator of neutrophil recruitment & lung inflammation is IL-17A.
6/
Based on work #inmice the major IL-17A producing cells following NLRP3 activation are RORγt innate lymphoid cells (ILCs).

More about ILCs in thread below
6/
Dysregulation leads to mix of pro and anti-inflammatory cytokines to be produced (cytokine storm). ROS generation & neutrophil degranulation could promote NET formation, possibly contributing to observed thrombosis.

This is all BEFORE seroconversion (~ day 7-10)
7/
Linking out 2 thread to end - but punchline:
STAGE 3 needs to be avoided at all costs.

2 ways to achieve:

1)prevent people from inhaling high virus titer
2)nuke inflammation in the respiratory vasculature well BEFORE exposure so IFN-λ is full online

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