Antibody tests for identification of current and past infection with SARS‐CoV‐2 - Deeks, JJ - 2020 | Cochrane Library cochranelibrary.com/cdsr/doi/10.10…

Living Cochrane Review of Antibody Tests – 1st version now published. Twitter summary to save you reading the 300+ pages
#1 Search date of 27 April 2020. Scanned 10,965 COVID-19 publications and pre-prints. Included 54 studies of test accuracy of COVID-19 antibody tests. Some studies looked at multiple tests, so total of 89 test evaluations including 15,976 samples (8,256 from COVID-19 patients)
#2 Most research studies done in China on tests developed and manufactured in China. Data found for 27 commercial tests and 25 in-house assays. 61% were lab assays (requiring venous blood), 39% with point-of-care assays (possible finger-prick blood)
#3 81% of studies done in hospitalised populations – likely to have had the highest antibody responses. Results may not apply to general public who have had milder disease
#4 Most studies (61%) restricted to confirmed COVID-19 cases. Probable COVID-19 cases (as defined by WHO and CDC China) were excluded. Thus samples biased to the clearest cases.
#5 48 (89%) studies identified COVID-19 cases separately from non-cases. Only 6 studies used a “single-gate” type designing, recruiting patients as a cohort before identifying COVID-19 status. More studies like this needed please.
#6 So quality of evidence looks poor. Lots of red and yellow on the QUADAS plot, so please treat any numbers which follow with caution. Lots more to read in the review about this Image
#7 High heterogeneity in sensitivity for IgG, IgM and IgG/IgM (range 0-100%) driven by differences in time since onset of symptoms. Tests really poor in week 1 (30% sens), a bit better in week 2 (65%) before hitting best performance (80-90%) in week 3 Image
#8 we’ve abandoned studies which did not allow stratification of sensitivity by week since onset of symptoms. That’s thrown out lots of studies, many of which may have misleadingly concluded tests were poor because they included people from early weeks without stratification.
#9 also little data beyond 35 days. Don’t know how these tests will hold up for longer duration seroprevalence surveys, or testing for infection which might have occured >5 weeks ago. Antibodies will wain and we don't know when.
#10 Specificity looked good. Lots of data Image
#11 Other problems included (a) unstated numbers of multiple samples taken from patients in many studies; (b) very rare for tests to be evaluated using blinding; (c) no mentions of exclusions; (d) use of laboratories and venous blood to evaluate finger-prick POC tests.
#12 Also clear evidence of publication bias as reported previously (from National COVID-19 testing panel) Image
#13 And nobody seems to have heard of STARD – not a single patient flow-diagram in the 54 studies. Reporting quality was shockingly poor.
#14 Bottom lines:
(A)TIMING REALLY MATTERS. Don’t use the test before 2 weeks. Studies which have done so many wrongly have decided some tests are useless.
#15 (B)TEST COULD HELP IDENTIFY COVID-19 IN PATIENTS WITH SYMPTOMS FOR >2 WEEKS. This could be useful given the lack of PCR testing in patients who suffered at home without a test, some of whom may still be sick and need medical care. Is anybody doing this?
#16 (C)WE DON’T KNOW WHETHER IT KEEPS WORKING > 5 WEEKS hopefully we’ll find some longer follow-up studies soon.
#17 (D)WE DON’T KNOW HOW WELL THEY WORK IN PATIENTS WITH MILD SYMPTOMS WHO WEREN’T HOSPITALISED hopefully we’ll find some studies in these groups soon
#18 (E)FIGURES FOR SENS AND SPEC MAY BE OVERESTIMATES BECAUSE OF MANY FLAWS IN STUDIES we need to move on and do studies in clinical pathways in representative groups
#19 (F)WE NEED TO UPDATE THE REVIEW WITH DATA FROM MAY AND JUNE ASAP its underway, we now know what we’re doing so hopefully we can be quick!
#20 and thanks to the many colleagues @Terg and in Cochrane groups in the Netherlands, Belgium and Switzerland, and Cochrane Editorial Team who helped do this – it was rapid because we've worked hard - not because of short cuts. We’re going to have a zoom drink to celebrate now!

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More from @deeksj

Jul 23, 2021
Daily Testing in school study report is out but presentation by BBC here is SPIN SPIN SPIN

The trial failed to show convincing reductions in school absence, and could not rule out large increases in Covid transmission. Sensitivity of the test was 53%.

bbc.co.uk/news/health-57…
The preprint for this study is here. Not yet peer reviewed.

modmedmicro.nsms.ox.ac.uk/wp-content/upl…
BBC says that reduced absence by 33%, but the ITT analysis in the text says 20% reduction with 95% confidence interval from 46% reduction to a 19% increases (p=0.27). So no convincing evidence of a reduction.
Read 12 tweets
Jul 18, 2021
SO what’s this POSITIVE news about medical tests?

Said it would be Monday, but actually the news broke this afternoon. So an early release from my tease …

Thanks for sharing your hopes about what it might be … I enjoyed many of them … but none were that close.

1/10
For me, positive news would be knowing

1) High quality tests are developed using the best expertise from industry and universities

2)Tests are evaluated in strong robust studies to work out whether they work in the real world for the purposes to which they are put

2/10
3) Study findings report the truth about whether they do more good than harm, and not spun for profit, popularity or reputation

4) Tests are developed to meet the greatest public health needs

5) Tests are affordable and available in the populations that need them most

3/10
Read 11 tweets
Jul 15, 2021
This new study suggests LFTs in primary care have sensitivity of 95% and specificity of 89%, but it is FLAWED.

These results are misleading because of PARTIAL VERIFICATION BIAS

A quick lesson ….

1/9
sciencedirect.com/science/articl…
Participants were first tested with LFTs – 810 positive and 1736 negative. The investigators choose to test 217 of the 1736 negatives with PCR – that’s 1 in 8. This wasn’t a random sample as they were influenced by clinical characteristics as well as the test result.

2/9
The sensitivity / specificity calculation is based on all LFT+ves and 12.5% of LFT-ves as follows:

3/9
Read 9 tweets
Jul 7, 2021
Even more data on LFTs out today.

@dhscgovuk released report of studies of Innova and Orient Gene, and their interpretation of findings.

Includes unpublished studies

BUT Clear evidence of post hoc interpretation of results based on naïve definition of infectiousness.

1/10
Long link is here:

gov.uk/government/pub…

2/10
@dhscgov define

HIGH viral load as >1,000,000 RNA/ml and appear to consider that these are the only cases which matter.

10,000 to 1,000,000 is LOW (not moderate)

<10,000 MINIMAL.

This is despite acknowledging there is no cut-off that categorises people as infectious

3/10
Read 11 tweets
Jun 22, 2021
Results from the LIVERPOOL EVENT PILOTS have been published on line and in the media. Somehow I missed these coming out. cultureliverpool.co.uk/event-research…

No official report from @dhscgov as per normal.
Seems important evidence is being delayed once again.

1/7
The bottom line is that the events were safe.

Kudos to Liverpool PH Team.

But detail is interesting to see why they were safe.

2/7
First the infection rate in Liverpool was very low when the events were held

Negative LFTs required for entry. 5/13263 positive and excluded. Same-day PCR found 4 people positive who had attended with false negative LFTs. So 5/9 were picked up by LFT – 44% missed.

3/7
Read 7 tweets
Jun 17, 2021
What do we known about ORIENT GENE used in the Daily Contact Testing Trial by the @educationgovuk and @DHSCgovuk?

There have been claims that this test is as good as others and has been reviewed by @MHRAgovuk for use in assisted testing. This is not right

1/10
The process does not make sense.

The MHRA never review products for assisted testing as they are professional use tests, which go through the self-certification process to get a CE-IVD mark.
MHRA doesn't go near this process.

2/n
In fact ORIENT GENE is not even on the MHRA register of products which is a requirement. You can check here - both for the product and manufacturer (sorry for the messy link).

3/n

aic.mhra.gov.uk/era/pdr.nsf/na…
Read 11 tweets

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