Jeff Clements 🦪 Profile picture
Sep 17, 2020 19 tweets 9 min read Read on X
A recent study in @nature couldn't replicate drastic CO2 effects on coral reef #fish behaviour & empirically found no effect of #oceanacidification go.nature.com/3hK49UR

Our #metaanalysis of the past decade on this topic concurs ecoevorxiv.org/k9dby/

Breakdown thread👇
We demonstrate one of the most striking examples of the #DeclineEffect in #ecology to date, w/ reported effects of OA on fish behaviour all but disappearing over past decade

If you’ve never heard of the #DeclineEffect see: bit.ly/2EbZX2o
Qualitatively the number of studies reporting “strong” effects of #oceanacidification on fish behaviour have plummeted over time
Quantitatively effect size magnitudes (log response ratio) have declined from averages of 3-4 in early pioneering studies to 0.2–0.4 over past 5 years

While highly significant in early years, mean effect size magnitudes have been non-significant from zero for 4 of past 5 years
To check if this #DeclineEffect was due to increasing studies on cold-water species, we removed cold-water studies (b/c these species may be more tolerant to OA than tropical coral reef species)

Nope…
But maybe OA only has an effect when some type of cue or stimulus is involved – after all, the biggest effects are with predator cues!

Again, nope…
OK, so if it’s not biological, then what could it be? Could it be… #BIAS!? 😱
We first checked for methodological bias

Underpowered studies are prone to Type I error & can often detect strong effects when they don’t actually exist

Do studies showing super-strong effects have low sample sizes?

Yep...
We also found that over time, avg n & proportion of studies w/ n>30 have increased

This suggests that the number of fish used in experiments partly explains the #DeclineEffect, but some high-n studies show strong effects, so n is not everything…
OK, but lots of fields have underpowered studies – what’s the harm?

Are studies w/ super-strong effects more likely to be published in influential high IF journals & thus get more attention?

….😬😬
Like sample size, we also saw that the average IF of journals publishing papers decreased over time

Note the strong blip in IF for 2014 which was accompanied by a similar blip in mean effect size for that year!

Strong evidence for selective publishing
This study provides strong evidence that dramatic reports of OA affecting fish behaviour are probably exaggerated &, frankly, false

The strong effects appear linked w/ methodological bias, selective publication of outstanding effects, and other unexplained phenomena
We suggest that OA-fish behaviour studies be given more weight when n>30 fish per treatment

It is imperative that authors REPORT SAMPLE SIZE PRECISELY!!!!

A massively frustrating part of this study was trying to decipher n – 34% of studies didn’t report it adequately!!
Reviewers & editors can also help here by being skeptical & critical of manuscripts reporting outstanding effects, especially those w/ n<30
We also strongly suggest that unbiased results be published early and alongside studies showing strong effects

How can we do this?

PRE-REGISTRATION!

go.nature.com/3c2Q43v
It’s also important for null results to be published in high IF journals so they are given equal public weighting

A scary anecdote w/ this paper: it’s been desk rejected by 5 high IF journals that previously published those extreme OA effects, each taking >1 month to decide…
Researchers should also incorporate best practices for behavioural studies whenever possible

for example, use published methodological guidelines such as bit.ly/2RAUghe & use automated technologies for recording behaviour if possible
Finally, be critical! Especially of early findings w/ large effects

Scientists are good at predicting which studies are likely to replicate & which ones won’t (see go.nature.com/3mtsCRK) – apply that skepticism early!!
Does #oceanacidification affect marine animals?

In many instances, yeah...

But in light of our results & those of the non-replication @nature study (go.nature.com/3hK49UR ), direct effects of OA on fish behaviour are likely small

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More from @biolumiJEFFence

Feb 5, 2022
The massive amount of positive attention that our article has been getting has forced me to reflect a bit on the process of getting this thing published

This has by far been the hardest paper to get published in my career to date

journals.plos.org/plosbiology/ar…

A boring thread:
I first presented this work at @SEBiology back in 2019 in Seville - what a brilliant conference

Photo credit: @Craig_R_White
Soon after, we submitted (a much shorter version of) this paper to Nature as a Comment - after a month and a half, the paper was desk rejected
Read 14 tweets
Feb 3, 2022
Our paper documenting an extreme decline effect in #oceanacidification studies on fish behaviour is now out in @PLOSBiology!

doi.org/10.1371/journa…

The paper is much different than the original preprint, so here’s a thread: Image
Some of the most drastic & ecologically worrisome impacts of #oceanacidification are reported for fish behaviour. Initial studies from 2009-2010 documented 100% impairment of anti-predator behaviour for fish exposed to ocean acidification conditions!

onlinelibrary.wiley.com/doi/10.1111/j.… Image
However, studies reporting no effects have seemingly increased in recent years, casting some doubt on these dire predictions

This phenomenon of decreasing effect sizes over time is not uncommon and is typically referred to as the “decline effect”

en.wikipedia.org/wiki/Decline_e… Image
Read 13 tweets
May 31, 2021
New paper out today in Limnology & Oceanography (@aslo_org) led by all-around great guy & scientist Mike Coffin!

“The killer within: Endogenous bacteria accelerate oyster mortality during sustained anoxia”

aslopubs.onlinelibrary.wiley.com/doi/full/10.10…
In a suite of experiments comparing #oysters treated w/ antibiotics vs. not, we demonstrate that bacteria endogenous to oysters accelerate mortality rates

The 3-year project was triggered by mass mortality of cultured oysters in 2016, seemingly linked to a period of low O₂
Generally, we found that oysters treated w/ antibiotics (chloramphenicol) lived approx. twice as long as those not treated with antibiotics

Oyster density appeared to have no effect on mortality rates under anoxia
Read 8 tweets

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