With @mlipsitch, our new piece in @ScienceMagazine on the open questions that may remain even after vaccine efficacy trials are completed. How well does the vaccine work in high-risk subgroups? And how well does the vaccine reduce onward transmission? 1/5
science.sciencemag.org/content/early/…
Vaccine efficacy trials are designed to measure individual-level protection, which serves as the basis for regulatory decision-making. But when we think about vaccination strategy at a population-level, other features like indirect protection come into play. 2/5
As a motivating example, to best protect high-risk groups like the elderly, we either need a vaccine that directly protects the elderly or we need a vaccine that can prevent younger people from transmitting to the elderly (ideally both!). 3/5
To generate evidence about whether the vaccine reduces infectiousness, viral shedding is one proxy, but we can also study the household contacts of breakthrough infections to measure secondary attack rate, like has been done for pertussis. 4/5
amstat.tandfonline.com/doi/abs/10.119…
Understanding these features will be useful for comparing vaccines, as vaccines may have different strengths and weaknesses. Thanks again to @mlipsitch. We hope this stimulates some useful discussion on how to generate broader evidence to inform strategic decisions. 5/5

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More from @nataliexdean

28 Sep
VACCINE EFFICACY 101: A biostatistician's primer

Ten tweets to cover:

- How is vaccine efficacy calculated?
- Distinguishing between infection, disease, & severe disease.
- Measuring reduced infectiousness.
- Vaccine efficacy vs. effectiveness!
2) Vaccine efficacy (VE) measures the relative reduction in infection/disease for the vaccinated arm versus the unvaccinated arm. A perfect vaccine would eliminate risk entirely, so VE = 1 or 100%. This can be calculated from the risk ratio, incidence rate ratio, or hazard ratio. Image
3) Vaccine efficacy of 50% roughly means you have a 50% reduced risk of becoming sick compared to an otherwise similar unvaccinated person. Or you have a 50% chance of becoming sick given that you were exposed to enough infectious virus to make an unvaccinated person sick.
Read 10 tweets
22 Sep
What is the best endpoint for Phase 3 vaccine trials? Disease of any severity? Severe disease? Infection? Most trials have selected the first, but this @PostOpinions piece is critical of counting mild cases. A thread in defense of what is being done. 1/6
washingtonpost.com/opinions/2020/…
First, this has been the plan for a while now. The WHO target product profile for covid vaccines was published in April, and lists that efficacy can be evaluated with respect to disease, severe disease, shedding, or transmission. 2/6
who.int/blueprint/prio… Image
Similarly, the FDA's guidance to industry was released in June. It states that either disease or infection are acceptable endpoints. 3/6
fda.gov/media/139638/d… ImageImage
Read 6 tweets
18 Sep
A thread for fellow statistical analysis plan nerds (warning: math ahead).

From Pfizer's protocol, vaccine efficacy will be estimated by the incidence rate ratio. A tutorial on how this corresponds to their planned beta-binomial analysis. 1/6
pfe-pfizercom-d8-prod.s3.amazonaws.com/2020-09/C45910…
Even though vaccine efficacy is estimated by the incidence rate ratio VE=1-IRR=1-(m1/T1)/(m0/T0), the underlying test is an exact test for a single binomial proportion. The proportion in question is what fraction of total endpoints are in the vaccine arm p=(m1/(m1+m0)). 2/6
Under 1:1 randomization, we have roughly equal follow-up time across both arms (T1=T0). If our null hypothesis was VE=0, we would expect p=50%, with the same number of events across arms. This null can be expressed as a function of the follow-up time p=T1/(T1+T0). 3/6
Read 6 tweets
13 Sep
Informative op-ed on vaccine EUAs from @ScottGottliebMD and Mark McClellan, but I still have questions about the process. Namely, how would an EUA impact our ability to collect the additional data we need to support broader use of a vaccine? 1/4
wsj.com/articles/how-e…
“The EUA process gives the FDA the power to require additional data as a condition of authorization. This is a virtue of the pathway... As data supporting safety and effectiveness grow, the FDA will have a stronger basis to make the vaccine available more widely.” 2/4
I haven’t seen enough discussion about how to collect additional efficacy data after an EUA is issued. Will randomized trials continue in populations not covered by the EUA? Will people want to participate? And what is the impact of an EUA on other products in development? 3/4
Read 4 tweets
30 Aug
When I see statements like this about an EUA for a Covid vaccine, I want to understand what exactly is being suggested. “Trials are complete”? Benefits outweigh the risk”?

My reactions to this interview. 1/7
The language around vaccine EUAs is vague. “Benefits outweigh the risks.” Risks vary across populations. The interview seems to hint at an EUA for a high-risk population, rather than the general population? Maybe healthcare workers? (I am speculating.) 2/7
fiercepharma.com/vaccines/even-…
But remember that the risk profile has not changed since the FDA issued their June guidance, and published many op-eds stating their plan. 3/7
washingtonpost.com/opinions/fda-c…
Read 7 tweets
20 Aug
What I don’t want:
- A return to stay-at-home orders

What I do want:
- Major investment in proactive solutions that allow us to return as close to normal as possible
What do proactive solutions look like:
- Widespread testing
- Rapid diagnostic tests (imagine having a 20 pack!)
- Robust tracing to detect new infections
- Support for safe isolation
- Better public education and messaging
- Improved ventilation
- Increased mask-wearing
Proactive solutions can decrease the reproductive number without requiring the general public to stay at home. This also lowers the threshold for how many people we need to get vaccinated to achieve control.
Read 5 tweets

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