Quick thread on 2nd doses and vaccine roll-out (and why my vaccine graph from yesterday accidentally went to the future).

You've probably seen headlines like the one below saying that Nova Scotia will soon be out of vaccine.

But then heard we have ~14k in storage. What gives?
I'll use two provinces: Nova Scotia (holds 100% of 2nd doses in reserve) and Ontario (does not).

Top/solid line are doses distributed to the province, bottom/dashed line are doses administered, and the shaded area are doses in storage.

NS has more in storage, proportionately
Both of the currently authorized vaccines in Canada require a 2nd dose (Pfizer at 21 days, Moderna at 28).

Provinces have taken different approaches to dealing with 2nd doses.
The most aggressive is Quebec, which is delaying 2nd doses out to 90 days in favour of giving more (v]vulnerable) people their first doses.
The middle ground is most of the other provinces, where they using most of their vaccines as they come in the door for a mix of 1st and 2nd doses as needed, trying to keep the 2nd doses in window*

*NACI has advised pushing the window out to 6 weeks should be fine.
And then there's reserving doses in advance. You vaccinate someone and then put their 2nd dose in the freezer for 3-4 weeks until they come back.
This upside of this approach is that it guards against severe supply chain disruption. You always have enough for the 2nd dose even if you never receive another dose.

The downside is that it is slower. We're in a pandemic and speed matters.
So let's see what holding doses in reserve looks like.

Here are the graphs from before, with the red-shaded area being doses that would be held in reserve. Every time someone gets their 1st dose, one goes in reserve. When they get a 2nd dose, it exits reserve.
Some things you may have noticed:

NS is *almost* out of vaccine if you consider the reserve doses off limits. Or it has a glut of unused doses if you think they should prioritize getting doses in arms over
Also: Ontario is not holding back doses and so is in a deficit, so to speak.

Ontario 'owes' more 2nd doses in the future than it currently has on hand.
Oh course, you don't 'owe' the 2nd dose at the moment you give the first. You only need it... at the time of the 2nd dose.

That's 21 days for Pfizer/28 for Moderna if we're being strict, or 6 weeks if we're not and just following NACI recommendations.
Here's NS if we shift 2nd dose obligations out 21 days (lighter red) or 6 weeks (darker red).

If NS never sees another dose, it can cover all it's 2nd doses still needed and *still* have some left over.
That's not the case for Ontario. They currently would have to use 100% of newly received doses to cover 2nd dose obligations (if they're sticking to the 21/28 day windows).

If they're using the broader six-week window, they have a lot more wiggle room.
NS is betting/acting like they will *never* be shipped another dose and therefore going slow to avoid delaying 2nd doses.

Ontario is betting/acting like they *will* get more doses and so is using that they have at the risk of delaying 2nd doses if that doesn't happen.
For what it's worth, neither is perfectly true.

There have been/will be supply disruptions that we'll have to plan around/be flexible for.

And also, being slower than you can be on vaccinations in the middle of a pandemic is not great.
If you're inclined, you can read a great paper on the topic here: acpjournals.org/doi/10.7326/m2…

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More from @WilsonKM2

31 Jan
Weekly COVID-19 update for Canadian provinces and US states (usually on Saturdays but I was resting yesterday).

Here are the full pandemic timelines of cases and deaths per capita for US states (blue) and Canadian provinces (red).
For the more geographically inclined, you can see the cumulative deaths per capita and current weekly cases per capita for each state and province.
This animation cycles through the various regions of the US (and Canadian provinces) for cases per capita over time.
Read 7 tweets
30 Jan
Today in the #AtlanticBubble

There were 15 new cases in the region today: 3 in Nova Scotia and 12 in New Brunswick.

One new death has been reported, bringing the regional total to 87.

There are now 285 known, active cases in the region.
By the numbers, this as been the deadliest week in the region since mid-May (6 deaths).
PEI reported no new cases today (the only correct number of cases to report).

There are now 6 known, active cases in PEI.
Read 11 tweets
28 Jan
Today in the #AtlanticBubble

There were 31 new cases reported in the region today: 4 in Newfounland and Labrador and 27 in New Brunswick.

There are now 339 known, active cases in the region. ImageImageImageImage
There was no update for PEI today, leaving them with 6 known, active cases. ImageImageImage
NFLD reported 4 new cases today, all in the province's Eastern zone.

1 is related to travel and the other 3 are close contacts of the case reported yesterday (still under investigation). Public health describes this as 'worrisome'.

There are now 9 known, active cases in NFLD. ImageImageImageImage
Read 10 tweets
7 Jan
I've got a few minutes while dinner is still cooking before I start work again.

Let's talk about vaccine distribution.

I post some version of this graph every day. Solid line is doses distributed to the province, dashed are doses administered. Shade is the difference. Easy.
Here's Ontario for comparison.

From this one graph, you can get a quick sense of how much a province *can* vaccinate and how quickly it *is* vaccinating given that constraint.

But there's bunch of information trapped in that shaded area. (Argh! Trapped data!)
The two SARS-CoV-2 vaccines currently in circulation are Pfizer/BioNTech and Moderna.

They are both 2-dose mRNA vaccines. You get one dose and then the 2nd a set number of weeks later. After ~10 days you're at 95% lower risk of developing symptoms (hurray!).
Read 13 tweets
7 Jan
Today in the #AtlanticBubble

There were 28 new cases in the region today: 4 in Nova Scotia and 24 in New Brunswick.

There are now 167 known, active in the Atlantic region. ImageImageImageImage
PEI didn't report today, so they still have 8 known, active cases as far as I know. ImageImageImage
NFLD once again reported no new cases, and are currently sitting at just 9 known, active cases. ImageImageImageImage
Read 8 tweets
6 Jan
Today in the #AtlanticBubble

(Another long one)

There were 47 new cases in the region today: 4 in PEI, 12 in Nova Scotia, and 31 in New Brunswick

All but 1 of the new cases outside of NB had a known origin at time of report.

There are now 156 known, active cases in the region
PEI is reporting 4 new cases today.

All were travel-related and are isolating as required.

There are now 8 known, active cases in PEI.
NFLD is reporting no new cases today, which is the correct number of cases to report.

There are now 9 known, active cases in NFLD.
Read 10 tweets

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