If one believes the official statistics (and the associated interpretation being made by politicians), there is currently dramatic evidence that vaccination is vastly reducing deaths in Scottish care homes.

Is this interpretation based on solid data?

bbc.co.uk/news/uk-scotla…
In both my training as a scientist and during my professional career in IT, I looked at a LOT of data.

A key requirement in both of these fields is the need for "interesting" results, to be reproducible.

If results can't be reproduced, that suggests a systemic error.
For example, if one was conducting clinical trials of a new vaccine across two countries, which had similar background infection rates, but the results showed:

Vaccine in Country A has 95% efficacy
Vaccine in Country B has 25% efficacy

One would need to ask serious questions.
Maybe there was a screw up in Country B and a large number who should have been given the new vaccine were given placebo instead?

Maybe the age profile of participants in the trials across both countries is VERY different?

e.g. Many far older people in the Country B trial?
Simply put, if you THINK you're doing the same thing each time, but seeing VERY different results, something is (very probably) off.

Recheck your assumptions, carefully.

Look for patterns.

Beware of confirmation bias.

See this thread, especially:

So, I've looked at the official records across Scotland (NRS), England/Wales (ONS) and Northern Ireland (NISRA).

For each week (of 2021), I have calculated the percentage of Covid-19 related Care Home deaths as a proportion of ALL Covid-19 related deaths in that country/region.
North East England

Week 1 (Jan 8th) - 31.44%
Week 2 (Jan 15th) - 32.33%
Week 3 (Jan 22nd) - 26.52%
Week 4 (Jan 29th) - 30.86%
Week 5 (Feb 5th) - 32.56%

Fluctuating with no clear trend.
North West England

Week 1 (Jan 8th) - 17.43%
Week 2 (Jan 15th) - 20.66%
Week 3 (Jan 22nd) - 24.23%
Week 4 (Jan 29th) - 24.95%
Week 5 (Feb 5th) - 21.26%

Fluctuating with a slight upward trend.
Yorkshire and The Humber

Week 1 (Jan 8th) - 24.24%
Week 2 (Jan 15th) - 27.41%
Week 3 (Jan 22nd) - 21.79%
Week 4 (Jan 29th) - 24.03%
Week 5 (Feb 5th) - 25.71%

Fluctuating with no clear trend.
East Midlands

Week 1 (Jan 8th) - 26.59%
Week 2 (Jan 15th) - 24.40%
Week 3 (Jan 22nd) - 28.10%
Week 4 (Jan 29th) - 31.15%
Week 5 (Feb 5th) - 30.85%

Fluctuating with a slight upward trend.
West Midlands

Week 1 (Jan 8th) - 24.91%
Week 2 (Jan 15th) - 22.77%
Week 3 (Jan 22nd) - 27.01%
Week 4 (Jan 29th) - 27.93%
Week 5 (Feb 5th) - 25.00%

Fluctuating with no clear trend.
East England

Week 1 (Jan 8th) - 21.81%
Week 2 (Jan 15th) - 25.73%
Week 3 (Jan 22nd) - 31.66%
Week 4 (Jan 29th) - 31.77%
Week 5 (Feb 5th) - 37.80%

Very clear (and large) upward trend.
London

Week 1 (Jan 8th) - 8.60%
Week 2 (Jan 15th) - 8.57%
Week 3 (Jan 22nd) - 9.50%
Week 4 (Jan 29th) - 9.25%
Week 5 (Feb 5th) - 12.12%

Trending upwards.
South East England

Week 1 (Jan 8th) - 31.58%
Week 2 (Jan 15th) - 30.26%
Week 3 (Jan 22nd) - 39.27%
Week 4 (Jan 29th) - 40.18%
Week 5 (Feb 5th) - 35.05%

Significant upward trend.
South West England

Week 1 (Jan 8th) - 34.04%
Week 2 (Jan 15th) - 38.19%
Week 3 (Jan 22nd) - 42.41%
Week 4 (Jan 29th) - 48.06%
Week 5 (Feb 5th) - 51.85%

Dramatic (and very alarming) upward trend.
Wales

Week 1 (Jan 8th) - 20.26%
Week 2 (Jan 15th) - 26.12%
Week 3 (Jan 22nd) - 33.78%
Week 4 (Jan 29th) - 31.30%
Week 5 (Feb 5th) - 28.03%

Definite upward trend.
Northern Ireland

Week 1 (Jan 8th) - 20.87%
Week 2 (Jan 15th) - 26.54%
Week 3 (Jan 22nd) - 24.56%
Week 4 (Jan 29th) - 26.67%
Week 5 (Feb 5th) - 23.30%

Fluctuating with no significant trend.
Scotland

Week 1 (Jan 4th) - 29.59%
Week 2 (Jan 11th) - 26.54%
Week 3 (Jan 18th) - 24.56%
Week 4 (Jan 25th) - 22.07%
Week 5 (Feb 1st) - 18.18%
Week 6 (Feb 8th) - 13.00%

Spectacular and VERY clear downward trend.
So, the Scottish results APPEAR to be an amazing success story, BUT they are very much at odds with the results for the rest of the UK.

They stand out dramatically.

What gives?
Bear in mind that similar Care Home vaccination strategies are being pursued across the UK, EXCEPT in Northern Ireland, where Care Home residents and staff have been given given 2 doses of Pfizer vaccine, 3 weeks apart, as per clinical trials.
One would expect a reduced immune response in the very elderly (normally) found in Care Homes. That was shown in the Pfizer study.

Yes, somehow, Scotland using a single dose is vastly outperforming Northern Ireland, where two doses have been given.

Is that credible? 🤔
Recheck your assumptions, carefully.

Look for patterns.

Beware of confirmation bias.

Is there an alternative explanation?

I think there is.
In the ONS statistics, this definition is used:

The term "care home resident" used in this dataset refers to all deaths where either (a) the death occurred in a care home or (b) the death occurred elsewhere but the place of residence of the deceased was recorded as a care home.
In the NISRA data, it lists separately the deaths of Care Home residents who die in Care Homes and Care Home residents who have died in hospital.

I have combined both of these figures for the purposes of this analysis.
My suspicion is that the Scottish data ONLY refers to Care Home residents who have actually died IN Care Homes.

The definition being used (related to this figure) is not clear in the NRS report.
This generic statement appears in the NRS report:

"The figures are produced using same definition as those published by the ONS (for England and Wales) and NISRA (for Northern Ireland), so are broadly comparable."

Broadly, is not neccessarily "entirely" comparable.
From the ONS and NISRA data, their respective definitions of Care Home deaths is very clear.

The NRS definition is somewhat opaque.

Which is more probable, truly miraculous results in Scotland relative to every other region in the UK, or not comparing like with like? 🤔
In the most recently published weekly NRS report, the Care Home deaths figure is 42.

One of my medical contacts told me that yesterday, in their hospital ward alone, there were 4 Care Home residents (with Covid-19) currently receiving end of life care.
It's clear that Covid-19 infections and deaths are falling generally.

It is also clear that Care Home residents have been highly vaccinated (with one Pfizer dose, apart from in Northern Ireland), relative to the general population.

Deaths are also typically a lagging indicator.
However, one would reasonably expect a shorter "lag" with (typically) frail Care Home residents.

If the NRS definition is as I suspect it may be, that would potentially "square the circle" with the results of the rest of the UK.
The NRS figures for last week list 42 Care Home Covid-19 related deaths out of 323 for Scotland, giving 13%.

If 25 Care Home residents died in hospital in the last 7 days, but don't appear in this Care Home Covid-19 deaths figure, this would have been 20.74%.
Perhaps the NRS figures do use the same definition as the ONS figures?

Maybe a significantly higher proportion of Scottish Care Home residents have been vaccinated, relative to England and Wales?

However, one would expect to see similar (if diminished) trends in other regions?
Certainly, achieving vastly better results than Northern Ireland, where 2 doses have been given, seems REALLY odd. 🤔

Recheck your assumptions, carefully.

Look for patterns.

Beware of confirmation bias.

Ask questions.
P.S. The percentage of hospital-based Care Home residents who died with Covid-19 in Northern Ireland, was:

Week 1 (Jan 8th) - 37.5%
Week 2 (Jan 15th) - 37.0%
Week 3 (Jan 22nd) - 18.9%
Week 4 (Jan 29th) - 25.0%
Week 5 (Feb 5th) - 16.6%

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More from @KennyMathieson

20 Feb
It's depressing that so many journalists (and some academics) are easily distracted by shiny objects (in the form of newly reported Pfizer efficacy "studies"), without (apparently) having read the source data and understanding the implications and limitations. 🙄
Last night @CNN reported (with almost breathless excitement), that a new Pfizer study in the @NEJM showed that a single dose of Pfizer vaccine is 92% effective.

Is that a fact?
This "new" study, contains NO new data.

It is a letter, NOT a paper.

It simply repeats the same statistical "trick" the JCVI did, calculating the efficacy of the 1st dose only after ignoring the data from the first 14 days after it was given.

No shit, Sherlock.
Read 22 tweets
12 Jan
The "hope" that @krishgm mentions is forlorn, in this case.

A thread in which I prove (using ONLY published Pfizer trial data) that the UK CMOs and JCVI have not so much ignored the science, as left it bleeding at the roadside.

Intrigued?

Read on.

From the moment, the decision was announced to delay 2nd vaccine doses, I've felt uneasy.

This is not my field of expertise, but I trained as a scientist (two chemistry degrees), worked professionally in IT, and understand the importance of testing.
My principal concern was about the Pfizer vaccine.

As vaccines go, it's "new tech", the first mRNA vaccine and the results are stunning.

Perhaps one should be cautious about deviating from a clinical trial procedure, at least until there is greater experience of mRNA vaccines?
Read 68 tweets
5 Jan
Since the UK plan to delay the 2nd Covid vaccine from 3 weeks to 12 weeks was announced, I've felt VERY uneasy.

My concerns are principally related to the Pfizer vaccine.

Having now read the original paper in the New England Journal of Medicine, I'd like to set out my concerns.
It has been suggested that there is unpublished data for the Oxford-AstraZeneca vaccine to support a 12 week gap between doses.

Accordingly, I reserve judgement on that vaccine until this data appears, but I do want to see that data.
Over the course of the last few days, I've read many helpful Tweets and Twitter threads by such as:

@farrell_katrina @BMAScotland @Tanya_Marlow @PaulBieniasz @helenamckeown @EmergMedDr @HelenRSalisbury @StFilansDream @krishgm @Nicola_Yeo @doctorcaldwell @toca63 & @DoctorChrisVT
Read 27 tweets
5 Jan
@patrickharvie I’ve read the Pfizer vaccine paper in the New England Journal of Medicine, which is here:

nejm.org/doi/full/10.10…
The paper states:

“The study was not designed to assess the efficacy of a single-dose regimen.”

This is the key graph related to vaccine efficacy.
The key numbers are at the bottom of that graph.

The 52.4% figure relates to efficacy after the 1st dose and before the 2nd dose.

However, there are 95% confidence intervals associated with that figure and the lower end is only 29.5%.
Read 14 tweets

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