THREAD on exponential growth, Omicron & what we might see in England over next few weeks.

In Gauteng province SA, cases (now almost all Omicron) have been growing at 25% a day for last three weeks.

Omicron rapidly increasing here, at roughly similar rate (so far). 1/12
Boosters might well slow it down, and vax + booster should reduce severe illness, but even a small percentage of large number can be a very large number.

And no reason to think Omicron can't sustain 25% daily growth here for at least a few weeks (*in absence of measures*). 2/12
Meanwhile, Delta is actually increasing slowly at the moment in England - Omicron might not replace it straight away, so much as co-exist and overtake it.

Sajid Javid said 276 sequenced cases of Omicron in England to date - all would likely have been infected pre 1 Dec. 3/12
There will be more than the sequenced cases. I've assumed 200 new daily cases of Omicron on 1 Dec & 25% daily growth.

For Delta, I've been v conservative and assumed 0% growth.

So where does that get you? 4/12
Well, you don't really notice Omicron for a few weeks (remember a new case will take a week or so to show up in a test result and a bit longer to show up in sequencing!).
But then it rapidly catches up Delta until at Xmas they are roughly equal and we're at ~90K daily cases 5/12
And the nature of exponential growth is that things get rapidly much worse - Omicron cases could continue to double every 3-4 days leading to well over 100K cases a day v fast.

Even if vaccines blunt much of the impact the sheer numbers could cause major problems. 6/12
This all assumes no changes in behaviour or measures - if people work from home, socialise less, wear better masks more often... all of it would slow it down and at this stage this makes a big difference. 7/12
E.g. slowing growth to 15% a day gets this.

Omicron would still eventally take over but would take another 2 weeks to match Delta - in which time we could have boosted another 5 million people and added protective measures. 8/12
The more we can slow it down, the better prospects we have as we learn more about it & vaccinate more and more people (inc hopefully children).

In these early stages, it can make a really big difference! 9/12
This is a TOY projection based on daily growth rates. Reality is far more complicated, with differential immunity at different ages to Delta & Omicron, different behaviours, school holidays approaching etc etc.

So take this mainly as an illustration of exp growth BUT 10/12
Over last 5 mnths, we've got used to things not doubling quickly. We're now back in 3-4 day doubling territory. That means decisions *cannot* wait for lots more evidence.

If Omicron as bad as feared, don't want to be at thousands of daily cases when that evidence comes. 11/12
The lesson of the pandemic has surely been that early action is better than late action.

I worry that we've *still* not learned this lesson. We should be acting to slow growth *now* as they are already doing in e.g. Ireland & Norway. 12/12
PS for those who like log scales, here is the main plot on a log scale.

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More from @chrischirp

1 Dec
Short thread on case growth in Gauteng province, SA.

I compiled daily reported cases in November from sacoronavirus.co.za/category/daily… and had a look at growth...

TLDR pure omicron growth there looks pretty scary. We do NOT yet know how it will translate here. 1/7
Just plotting daily reported cases (dots) and the rolling centred average shows rapid increase in cases last few weeks of November. Blue dots are weekend reporting effects (Sundays and Mondays).

But for exponential growth we really need log scales... 2/7
Same chart on log scale looks like 2 periods of exp growth - one slower in 1st half Nov & then faster in 2nd half. Can interpret as period when Omicron gaining dominance over Delta (so smaller % of cases) & from 15th purer Omicron growth (now considered >90% of Gauteng cases) 3/7
Read 8 tweets
26 Nov
Very quick thread on UK covid situation:

TLDR: boosters going well now, cases rising particularly in children, admissions & deaths dropping 1/5
First vaccination: boosters now in about quarter of population - NI is a bit behind other nations.

Very good booster coverage in over 70s - would be great to get it higher.

Significantly lower uptake in more deprived areas.

Teen vax ongoing (slowly). 2/5
Second cases: cases climbing in UK. Over 50K again today. By date of test, climbing in NI & England and falling (a little) in Wales & Scotland. But positivity rates falling in NI so could be more testing.

Slightly diff picture from ONS with nations either rising or flattish. 3/5
Read 5 tweets
26 Nov
Some thoughts about Nu and bad timing, benefit of delaying spread & what we should do... 1/5
First timing: a new dangerous variant arrives just before millions of people across world start travelling internationally for Christmas holiday period - not good.

Millions of people travelling within and to US this week for Thanksiving just as variant announced - not good. 2/5
Second: Delaying spread: UK won't keep it out forever. But delaying has large benefits.

We're currently boosting almost 2.5 million people every week. Even a few weeks delay is millions more vulnerable adults with extra protection. That matters. 3/5
Read 5 tweets
25 Nov
THREAD on the new variant B.1.1.529 summarising what is known from the excellent South African Ministry of Health meeting earlier today

TLDR: So much uncertain but what *is* known is extremely worrying & (in my opinion) we should revise red list immediately.

This is why: 1/16
The South African Ministry of Health had a live streamed briefing today on the new variant detected there.



The variant was identified this week and has been found in three countries so far: Botswana, South Africa and Hong Kong (returning traveller). 2/16
In South Africa it has been detected in Guateng province - positivity rates in Tshwane (part of Guateng) have increased massively in the last 3 weeks from less than 1% to over 30%.

3/16 Image
Read 17 tweets
24 Nov
THREAD on Europe and whether UK is a good position for winter...

TLDR: Much of Europe in v difficult circumstances.
But UK has been in difficult circumstances since June with much more total illness and death, and still is. 1/17
Concentrating on W Europe where vax rates & context are more similar - E Europe is in its own world of pain, mainly due to population with high existing health problems and low vax, particularly in vulnerable. 2/17
Many countries in W Europe going through bad Covid surges - in both cases and deaths - each for their own combo of reasons of measures, behaviours, vax rates, waning.

They have similar vax rates to UK but are later in boosting (but also vaxxed later so waning later). 3/17
Read 18 tweets
21 Nov
Some personal thoughts:

Husband and I have just recovered (mostly) from Covid... no idea how we got it since we've been super careful and not done much. Shopping or swimming we think.

I am left grateful for masks & vaccines - here's why: 1/8
Firstly vaccines: having Covid sucked but I am sure it would have sucked much worse without being vaccinated. I am grateful that I had the chance to get that protection first.

I'm annoyed that I got sick a few weeks before my booster was due, but that's life. 2/8
Secondly masks: the first symptoms were so innocuous it was only obvious later what they were. I was 100% convinced we didn't have Covid cos we'd been so careful.

The weekend before symptoms and 1st day of, we were in *a lot* of shops.
3/8
Read 10 tweets

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