Rupert Beale Profile picture
Jan 20 15 tweets 12 min read
Three doses of vaccine protects healthy people reasonably well against Omicron. The critical question is: how well will vaccines protect the most vulnerable? Here we look at a correlate of vaccine efficacy in a vulnerable group. @TheLancet with @EdjCarr. thelancet.com/journals/lance…
2/n We report authentic live virus neutralisation (best correlate of vaccine efficacy) of Omicron & Delta by haemodialysis (HD) patients after 3rd doses of BNT162b2.
Funding @Kidney_Research @NKF_UK @PKDCharity @KidneyWales
Thanks to patients taking part & @ukkidney colleagues.
3/n HD patients had partial protection during Delta wave
VE estimates against hospitalisation of 38% (95% CI 0-57)
medrxiv.org/content/10.110…
@SamiraBell76 @drpaddymark
Of OpenSAFELY co-morbidities, HD had one of the highest death rates
medrxiv.org/content/10.110…
@Roxytonin @OpenSafely
4/n HD vaccine responses are attenuated. We showed in August 2021: median neutralising antibody titres against Delta after two ChAdOx-1 were <40 [less than range of our assay] in HD patients without prior infection.
thelancet.com/journals/lance…
Tweetorial:
5/n Health care and laboratory workers develop good titres of Omicron neutralising antibodies after 3 doses of BNT162b2

thelancet.com/journals/lance…
Tweetorial:
6/n … but do HD patients respond as well?

We used live virus microneutralisation assays - developed by @MaryYiWeiWu @DrUlferts Ruth Harvey & Mike Howell - to assess titres before and after dose 3 (median 27days post) 98 patients, 50 sera after dose 3.
7/n Assay published widely, and we know it correlates well with estimates of vaccine efficacy:
elifesciences.org/articles/69317
thelancet.com/journals/lance…
thelancet.com/journals/lance…
thelancet.com/journals/lance…
8/n We found that a dose of BNT162b2 after ChAdOx/ChAdOx or BNT162b2/BNT162b2 increased titres against Delta, likely above the correlate of protection.
9/n Looking at Omicron titres, we found that three doses of BNT162b2 induced neutralising antibodies to a median ~256. For ChAdOx/ChAdOx/BNT162b2 that induction was modest, with a median <40.
10/n Caveat: this is an observational study and the ChAdOx/ChAdOx/BNT162b2 recipients are ~10 years older than the BNT162b2/BNT162b2/BNT162b2.
11/n Some HD patients are immunosuppressed - eg failed renal transplants, or for ongoing autoimmune disease. Excluding immunosuppressed patients from the analysis improved both responses (details in the paper).
12/n In the UK, HD patients are offered 3 doses. A small group - who are immunosuppressed - are already eligible for 4 doses. Our data suggests that eligibility might need to widen.
14/n Thanks to Gavin Screaton from @OxfordMedSci, who shared an Omicron isolate for distribution by #G2P-UK led by @wendybarclay11.

This is the second 'trailer', feature length to come (1k patients).
And again, thanks to our funders, patients and colleagues.
15/n Huge @TheCrick team and @UKKidney colleagues coordinated by brilliant @EdjCarr, who also wrangled data tirelessly! 👏👏👏

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More from @bealelab

Aug 12, 2021
Delighted to share this in @TheLancet, with @EdjCarr. Neutralisation of live SARS-CoV-2 (+variants) in haemodialysis patients after BNT162b2 or ChAdOx-1.
thelancet.com/journals/lance…
Funding @Kidney_Research @NKF_UK @PKDCharity @KidneyWales
Thanks to patients taking part. 1/n
2/n Context-1: Haemodialysis [HD] patients respond poorly to traditional vaccines.
Hepatitis B vaccine is reformulated
Pneumococcal boosters are recommended
Influenza vaccine responses are attenuated
Context-2: HD patients either excluded from Phase III trials, or not reported.
3/n Context-3: HD patients clinically vulnerable: CFR ~25% in first wave.

Context-4: HD patients could not shield. They had to come to hospital 3x / week for HD.
Read 16 tweets
Apr 5, 2021
Can regular testing help with reducing the spread of Covid? Yes it definitely can, in the right context. It's not a panacea, but with education and other sectors of the economy opening up before we are fully vaccinated it's vital we try to make this work. bbc.co.uk/news/uk-566320…
First, the basics. You will never detect infection in the first day or two after exposure. Then the viral load goes up massively, then – after that – symptoms start. The idea behind these programmes is to detect cases before symptoms start, and to detect asymptomatic cases.
3/n This illustration from @michaelmina_lab shows how this can take place. You could use a high sensitivity PCR test, or a lower sensitivity lateral flow test.
Read 10 tweets
Dec 31, 2020
Right Twitter, it's been a dreadful 2020 and the first half of 2021 isn't looking too clever either. For no other reason than hubris, I wish to bestow my own awards for best Pandemic tweeting of 2020. These are of course entirely worthless, being based purely on my own bias.
First category is hotly contested: best ITU tweeter of the pandemic. Nominations @rupert_pearse (reality), @WelshGasDoc (humour) and @kennethbaillie (science). But the winner is... @charlot_summers.
Next we have a much easier category: opponent of the pandemic. Very easy, this is @BallouxFrancois. Often wrong, but never because he distorted the evidence to suit his own agenda.
Read 14 tweets
Jul 24, 2020
A thread as promised on this biorxiv.org/content/10.110… from George Kassiotis’ lab including @kevinWng and others @thecrick, the result of incredible teamwork with @uclh.
This is a paper born of adversity, and contains two really important and unexpected findings. When the pandemic hit London hard – very hard – we had minimal diagnostic capacity. Our main focus was the critically important qPCR pipeline for diagnosing active infection,
3/n but George’s lab and with @RealMcCoyLab and @eleni_nastouli and colleagues at UCLH took on the task of developing diagnostic serology. One very annoying aspect of this is that there is some cross-reactivity between previous seasonal coronavirus infection and SARS-CoV-2.
Read 14 tweets

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