Galaxy is an open source, web-based platform (usegalaxy.org) for accessible, reproducible, and transparent computational biomedical research. (2/n)
It allows users WITHOUT programming experience to easily specify parameters and run individual tools as well as larger workflows (3/n)
With Galaxy, you are able now to run RNA-seq pipelines, single-cell RNA-seq pipelines, genomics analyses, genomics file manipulations, metagenomics, statistics, visualizations... (4/n)
Galaxy also captures run information so that any user can repeat and understand a complete computational analysis (5/n)
Finally, it allows users to share and publish analyses via the web (6/n)
Top 10 references for learning Bioinformatics š»š§¬
A thread...š§µ
(DM me if you are interested in the PDFs)
(1). Developing Bioinformatics Computer Skills
- One of the first comprehensive references for Bioinformatics concepts
- Covers the Unix file system, building tools & databases, introduction to Perl for bioinformatics, data mining, and data visualization. oreilly.com/library/view/dā¦
(2). Bioinformatics Data Skills
- Covers Unix pipelines, Bash scripts and Makefiles, exploratory data analysis techniques in the R language, common genomics data file formats like FASTA, FASTQ, SAM, and BAM, the Git version control system, oreilly.com/library/view/bā¦