Biotech2k Profile picture
Jul 10 16 tweets 4 min read
#Oncogenetics Part 2:

Genomic Instability.
1/ When it comes to cancer genetics, I am sure we have all heard of Onco-genes or Tumor Suppressor genes. There is another set of critical genes in controlling cancer that most people haven't really heard about.
2/ These are the genes that control the many proteins and enzymes that regulate the integrity of the DNA itself.
3/ We all know now that cancer starts with mutations to the DNA. There are many causes of the damage. It could be a simple mistake with the machinery in the cell that copies the DNA during cell division.
4/ These mistake are rare, but they do happen. There are enzymes designed to detect and repair those mistakes. Even with the repair machinery, some of those mistakes get through.
5/ The mutations could be caused by chemicals or ionizing radiation. These can cause direct damage to the DNA in the form of deamination, alkylation, or base fusions. There are many enzymes designed to find deamination, alkylation, miss-matches or even fusions.
6/ There are several pathways that detect various DNA damage and initiate repair. They are Base Excision Repair (BER), Nucleotide Excision Repair (NER), Single Strand break repair, and even Double stranded break repair.
7/ There are many of these pathways. You probably heard of Homology Directed Repair and Non-Homologous End joining from Gene Editing. These are 2 of the many DNA repair pathways that fix double stranded breaks.
8/ Some of the other enzymes responsible for fixing DNA you might have heard of are BRACA1 and BRACA2 which play a role in Breast cancer for women and Prostate cancer for men. Another of these would be PARP which plays a role in Base Excision repair and Homology Directed Repair.
9/ What happens when one of these genes that are responsible for verifying the integrity of DNA itself mutates? This is where Genomic Instability happens. The loss of the ability of the DNA to fix itself.
10/ This allows for rapid and rampant genetic mutations. This is where you get Chromosomal rearrangements also known as Chromothripsis. You can get gene deletions, gene duplications and even gene inversions.
11/ You might have heard of the most famous translocation mutation called the Philadelphia Chromosome. This is a very common translocation in CML where part of the chromosome 9 and 22 swap a chunk of their DNA.
12/ This translocation places an oncogene right next to a promoter that has much higher activity than it normally would have. It leads to a higher level of growth of completely normal myeloid cells.
13/ Genetic instability takes the safety checks off the DNA which unleashes the potential for all kinds of new mutations in the DNA. This is actually one of the hallmarks of cancer.
14/ When a cell begins to hypermutate because it has completely lost control of checking the DNA properly. This leads to the rapid ability of each generation of cancer cells to evolve.
15/ Cancer cells become an uncontrolled experiment in rapid evolution with many new mutations being developed and tested in a living tissue.

• • •

Missing some Tweet in this thread? You can try to force a refresh
 

Keep Current with Biotech2k

Biotech2k Profile picture

Stay in touch and get notified when new unrolls are available from this author!

Read all threads

This Thread may be Removed Anytime!

PDF

Twitter may remove this content at anytime! Save it as PDF for later use!

Try unrolling a thread yourself!

how to unroll video
  1. Follow @ThreadReaderApp to mention us!

  2. From a Twitter thread mention us with a keyword "unroll"
@threadreaderapp unroll

Practice here first or read more on our help page!

More from @Biotech2k1

Jul 10
#Oncogenetics Part 3:

This will cover Tumor Suppressor and Onco-Genes.
1/ Now we covered the DNA repair genes that validate the integrity of the DNA, we can look at the growth pathway genes that move the cell through the growth cycle into mitosis.
2/ There are two sets of genes with the Tumor Suppressor Genes and the Proto Oncogenes. The tumor suppressors act like the breaks. They are there to prevent the cell from moving through the cycle until they get a signal to allow it to do so.
Read 21 tweets
Jul 10
#Oncogenetics Part 1:

This will be an introduction with the biology of oncology. Then I plan to get into the genetics. I will then come back and do a walkthrough example of how genetics drive the development of a tumor.
1/ Cancer doesn't start with just 1 mutation. It is an accumulation of mutations over time. It starts with just one cell that develops a mutation which gives it an advantage to grow.
2/ That cell replicates faster than other cells around it or it replicates when its not supposed to. As it continues to divide, it will eventually gain more beneficial mutations which move it down the path toward cancer.
Read 22 tweets
Jul 10
1/ Some of the more common CD indicators and what they are for.
2/
CD-1 = Used in some Immune cells to as a receptor for recegnizing lipid pathogens
CD-3 = It is part of the T cell receptor complex for transducing the signal
CD-4 = This is the co-receptor for Helper T cells receptors
3/
CD-8 = This is the co-receptor for Cytotoxic T cell receptors
CD-11 = Part of the Leukocyte adhesion molecule along with CD-18
CD-16 = The antibody receptor for the Fc portion of antibodies
CD-18 = Part of the Leukocyte adhesion molecule along with CD-11
Read 7 tweets
Jul 9
1/ Gene Editing Part 2:

This will cover CRISPR.
2/ CRISPR comes in the same 2 basic parts as any other gene editor. It has the guide built from RNA which feeds into the CAS nuclease which does the cutting.
3/ CAS enzyme will wrap around the DNA and open it up. It will run the RNA based guide along one of the strands until it finds the match for its guide. It has a second site specific guide built into it call a PAM sequence.
Read 22 tweets
Jul 9
1/ Gene Editing Part 1:

This will look over the different editing technologies of ZFN, TALEN and CRISPR. It will include a basic overview of the science and how it works. I will include some advantages and disadvantages along with personal comments from past experience.
2/ Common Attributes:

The most common attribute of these editors is the introduction of a double stranded break (DSB). This causes the use of Non-Homologous End Joining (NHEJ) DNA repair. This can cause insertions or deletions of random bases in the DNA from the repair.
3/ We call these insertions and deletions (Indels). They can lead to mutations which will potentially cause cancer. These technologies work well for gene knockouts where the mutation is the goal. A knocked out gene does not get translated into protein.
Read 19 tweets
Jul 8
$XBI is now up over 32% from its double bottoms around $62 to $63. It surely looks to want to run to $90 or even the mid 90's before it will run into some resistance. Its been a big move in a lot of really beaten down stocks.
When we get to $90, that is when you should look at just raising a little cash. May plan if we get to that range is to dump my worst company so I can rotate that cash into other companies when we give back some of this move in the fall.
This is part of my plan into the biotech recovery to maximize my taxes by selling only the losers and realizing the losses and keeping the winners long term for the lower long term cap gains benefits. It is also sound strategy.
Read 4 tweets

Did Thread Reader help you today?

Support us! We are indie developers!


This site is made by just two indie developers on a laptop doing marketing, support and development! Read more about the story.

Become a Premium Member ($3/month or $30/year) and get exclusive features!

Become Premium

Don't want to be a Premium member but still want to support us?

Make a small donation by buying us coffee ($5) or help with server cost ($10)

Donate via Paypal

Or Donate anonymously using crypto!

Ethereum

0xfe58350B80634f60Fa6Dc149a72b4DFbc17D341E copy

Bitcoin

3ATGMxNzCUFzxpMCHL5sWSt4DVtS8UqXpi copy

Thank you for your support!

Follow Us on Twitter!

:(