The Sato Lab (Kei Sato) Profile picture
Jan 15, 2023 7 tweets 4 min read Read on X
BREAKING🔔 We introduce the latest work from G2P-Japan🇯🇵 focusing on the virological characteristics of new SARS-CoV-2 lineage of concern, XBB.1.5 (aka #Kraken), which is rapidly spreading in the US🇺🇸 Please RT! Preprint/peer-review paper will come soon🔥 1/
XBB.1.5 = XBB.1 + #F486P in spike. We also found that a part of XBB.1.5 has reversion mutation in Y144del (=XBB.1.5 + #ins144Y) in spike. Because #Y144del evades antiviral immunity and decreases pseudovirus infectivity, its reversion might be also critical. 2/
First, a brilliant young talent, @jampei2, showed that the relative basic reproduction number (Re) of XBB.1.5 is >1.2-fold greater than the parental XBB.1 (❗️). Importantly the "1.2-fold difference" is similar to the differences between BA.1 versus BA.2 and BA.2 versus BA.5. 3/
We then showed that the KD value of XBB.1.5 spike is greatly lower than that of XBB.1 spike, meaning that XBB.1.5 spike exhibits very strong affinity to human ACE2, which is attributed to #F486P mutation. 4/
Experiments using pseudovirues also showed the ~3-fold increase of infectivity by #F486P mutation (XBB.1 << XBB.1.5). On the other hand, #ins144Y increased the infectivity of XBB.1 (XBB.1 < XBB.1+ins144Y) but did not increase that of XBB.1.5 (XBB.1.5 = XBB.1.5+ins144Y). 5/
Neutralization assay showed that XBB.1.5 is robustly (41-fold vs B.1.1, 20-fold vs BA.2) resistant to BA.2 breakthru infection sera. XBB.1.5 is also severely (32-fold vs B.1.1, 9.5-fold vs BA.5) resistant to BA.5 breakthru infection sera. 6/
In sum, our results suggest:
XBB.1.5 = XBB.1 + F486P = profound immune resistance + augmented ACE2 binding affinity → increased transmissibility. 7/7

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More from @SystemsVirology

Nov 21
#拡散希望 速報🔔 G2P-Japan🇯🇵の新しいプレプリント「JN.1対応mRNAワクチンが誘導する中和抗体の効果の評価」を、bioRxiv @biorxivpreprint に発表しました。1/
biorxiv.org/content/10.110…
本研究では、#ファイザー 🇺🇸🇩🇪のワクチンと、#第一三共 🇯🇵の国産ワクチンを接種した方の、ワクチン接種前後の血清を用いた検討実験を行いました。
まず朗報として、2つのワクチンで誘導される中和抗体の活性に大差はなく、どちらの血清も、JN.1のみならずKP.3.1.1やXECの感染を強く抑制しました。2/ Image
しかし、科学的観点からは、注目すべき点がふたつ。

その1。われわれは最近、JN.1やKP.3.3の「自然感染」では、強い中和抗体活性が誘導されないことを示しました。しかし上述の通り、JN.1ワクチンでは、強い中和活性(NT50; 50%中和抗体価)が誘導されています。この違いはいったい🤔? 3/ Image
Read 9 tweets
Nov 21
BREAKING🔔 A new study from G2P-Japan🇯🇵, led by Keiya @Keiya717, is out at @biorxivpreprint. We assessed the humoral immunity induced by JN.1 mRNA vaccines against a broad range of SARS-CoV-2 variants including JN.1, KP.3.1.1 & XEC. Please repost🔥 1/
biorxiv.org/content/10.110…
In this study, we used 2 mRNA vaccines, one is from Pfizer/BioNTech🇺🇸🇩🇪, while another is from Daiichi-Sankyo🇯🇵. The good news is that there are no significant differences between them and both broadly neutralized a variety of SARS-CoV-2 including JN.1, KP.3.1.1 and XEC. 2/ Image
But there are two scientific interests.

First, compared to our recent study using JN.1 and KP.3.3 breakthrough (i.e. natural) infection sera, antiviral humoral immunity against KP.3 and XEC was weakly induced. However, JN.1 mNRA vaccine can. Why🤔?? 3/ Image
Read 8 tweets
Oct 17
BREAKING🔔 A new study from G2P-Japan🇯🇵, led by Yu in my lab, is out at bioRxiv @biorxivpreprint. We elucidated the virological characteristics of SARS-CoV-2 #XEC. Please repost🔥 1/
biorxiv.org/content/10.110…
Compared with KP.3, #XEC harbors two spike substitutions, S:T22N and S:F59S. Recombination analysis by Shusuke @KawakuboShusuke showed that XEC is a recombinant lineage of KS.1.1 (JN.13.1.1.1) and KP.3.3 (JN.1.11.1.3.3) with a breakpoint at genomic position 21,738–22,599. 2/ Image
Image
Transmissibility/fitness (Re):
Molecular phylogenetic-epidemic dynamics modeling led by Jumpei @jampei2 and Kaho showed that the Re of #XEC is greater than that of KP.3.1.1, the most predominant variant in the world. 3/ Image
Read 7 tweets
Jul 17
#拡散希望 速報🔔 G2P-Japan🇯🇵の新しい研究成果「新型コロナウイルス変異株KP.3.1.1のウイルス学的特性の解明」について、プレプリント公開に先立って速報します。本研究では、最近いくつかの国で増加傾向にある、JN.1の子孫株である新しい変異株KP.3.1.1の特性を検証しました。1/
春になり、JN.1の子孫株が出現し、それらが優勢になり始めています。現在本邦は第11波に入っていますが、それはこれらのJN.1の子孫株によって引き起こされています。現在の流行状況などについては、本日公開の最新コラムで解説しています↓ 2/
そのひとつ、KP.2 (JN.1.11.1.2)については、すでにG2P-Japan🇯🇵が論文として報告しています。3/
Read 10 tweets
Jul 17
BREAKING🔔 Here I want to quickly report our new results from G2P-Japan🇯🇵 before the preprint publication. We have elucidated the virological characteristics of SARS-CoV-2 KP.3.1.1 - a progeny of JN.1. Please RT🔥 1/
Cf.1 A new one, KP.2 (JN.1.11.1.2), has been already elucidated. 2/
Cf.2 Another new ones, KP.3 (JN.1.11.1.3), LB.1 (JN.1.9.2.1) and KP.2.3 (JN.1.11.1.2.3), have also been already elucidated. 3/
Read 8 tweets
Jun 6
#拡散希望 速報🔔 G2P-Japan🇯🇵の新しい研究成果「新型コロナウイルス変異株KP.3, LB.1, KP.2.3のウイルス学的特性の解明」について、プレプリント公開に先立って速報します。本研究では、最近いくつかの国で増加傾向にある、JN.1の子孫株である新しい3つの変異株の特性を検証しました。1/
春になり、JN.1の子孫株が出現し、それらが優勢になり始めています。そのひとつ、KP.2 (JN.1.11.1.2)の特性については、すでにG2P-Japan🇯🇵が論文として報告しています。2/
今回着目したのは、KP.2にやや遅れて出現した3つの株、KP.3 (JN.1.11.1.3)、LB.1 (JN.1.9.2.1)、KP.2.3 (JN.1.11.1.2.3)です。それぞれ、こんな変異を持っています。
(*参考まで、JN.1=BA.2.86.1.1で、BA.2.86系統の子孫株)3/ Image
Read 8 tweets

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