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Martin Larralde Profile picture
Martin Larralde
@althonos
From Paris, PhD candidate in Bioinformatics, @ZellerGroup at @EMBL, associated @crc1371 PhD student. Open-source enthusiast and wannabe poet.
Dec 4, 2022 • 8 tweets • 4 min read
After a few quiet months, the next release of #PyHMMER is out today with some new major features! You can now use a target database for search methods without having to load it entirely in memory, just pass a SequenceFile object directly (s/o @felixmlanger):
Aug 5, 2022 • 4 tweets • 3 min read
Just released another #Python package for #bioinformatics: #Cython bindings to FAMSA, a very fast algorithm for #MultipleSequenceAlignment by @sdeorowicz, Agnieszka Debudaj-Grabysz and @AdamGudys! Get it here: github.com/althonos/pyfam… Just create an Aligner object (with additional configuration if you want), then give it some sequences to align: