Scientist and Group Leader of the Simons Machine Learning Center @SEMC_NYSBC. Co-founder and CEO of https://t.co/YcCw0bpHZo. Opinions are my own.
Jun 14, 2023 • 9 tweets • 4 min read
Excited to announce PoET, our (@timt1630, @tbepler1) retrieval-augmented generative protein language model that achieves state-of-the-art unsupervised variant function prediction performance on #ProteinGym. #MachineLearning#ProteinML 1/9
arxiv.org/abs/2306.06156
Inspired by evolution, PoET conditions on observed protein sequences to infer fitness constraints and extrapolate a generative distribution of protein sequences. This allows PoET to be focused on any level of homology, from superfamilies to families to subfamilies and beyond. 2/9
Jun 13, 2023 • 4 tweets • 3 min read
Here, we used #MachineLearning to design high diversity antibody variants with orders of magnitude greater potency than could be found with conventional directed mutagenesis. #ProteinML#AntibodyEngineering
doi.org/10.1038/s41467…@NatureComms 1/4
Our method uses protein embeddings and Bayesian ML to design optimized antibody variant libraries, and we compare directly with other methods in a head-to-head prospective design study. 2/4