Who should be vaccinated next?
1st batch Pfizer/BioNTech vaccine is shipping & will go to HCW + nursing homes as it should. But next tier is debated (essential workers? elderly? pre-existing morbidities?).
Model suggests elderly for decreasing deaths but more info needed
Thread
FDA & CDC have given green light for Pfizer/BioNTech vaccine. Supplies are very limited initially & transmission is raging so it's important to choose carefully in who to vaccinate first. How can we determine what is best? Mathematical models!
A very nice paper by @bubar_kate @DanLarremore @StephenKissler @sarahcobey @yhgrad @mlipsitch tries to determine which age group should be prioritized to minimize deaths, years of life lost, and total incidence.
medrxiv.org/content/10.110…
There are a few key unknowns (most importantly, does vaccine reduce infection/infectiousness or just symptoms? ) so paper has to examine multiple possibilities & see if recommendations are robust to uncertainty.
Paper compares 5 age group prioritizations (<20; 20-49; 20+; 60+, uniform) under 3 scenarios: 1) 1% of pop vaccinated per day w/ R0=1.3; 2) 1%, R0=2.6; 3) vaccination before transmission w R0=2.6). Fig shows 2 outcomes: reduction in deaths, infections w/ no age-dependent efficacy
Targeting 60+ is always best or nearly best for reducing COVID-19 deaths under these scenarios;
Reducing infections is best achieved by targeting 20-49 (possibly b/c contact & transmission is higher in 20-49 than older groups? paper doesn't say or show contact matrix).
Answer is simple then, right? Not quite. Of the 3 scenarios, scenario 1 R0=1.3 is much closer to reality & needs to be adjusted further: namely, R0/Rt in most of the world is presently at or below 1.3 (epiforecasts.io/covid/posts/gl…). Figs show a few states, countries; others same.
Why does this matter? Isn't allocation to elderly robust to variation in R0?
It's not clear. Can @bubar_kate @DanLarremore update models & show new scenarios w/ R0<1.3?
(Note, can replace some current scenarios in paper: data shows vaccine efficacy doesn't depend on age;
DOI: 10.1056/NEJMoa2034577)
Specifically, what does model suggest for R0 = 1.05-1.3 (where most of world is now?). Fig suggests that targeting young *might* be better. Also, what if vaccine supply = 70% rollout rate match projected vaccine availability?
I'm *guessing* model will still suggest targeting 60+ is best for reducing mortality. If so, plan to prioritize others essential workers before elderly will lead to many additional deaths. Obviously can consider more than deaths but additional deaths likely very large.
(Note: I'm also puzzled why NAS prioritization puts co-morbidities higher than elderly. I'm pretty sure 75 yr old has much higher (10x? 50x) chance of death than 30 yr old w/ 2 pre-existing conditions. If I'm wrong - link to paper showing opposite). Also, age much easier to know.
Also, @bubar_kate @DanLarremore what is best for reducing hospitalizations & ICU cases? I'd argue these are much more important than total infections. (Note: age specific estimates for hosp, ICU available in 10.1126/science.abc3517
doi.org/10.1016/S1473-…)
Key additional point: Model makes it clear that prioritizing those w/out previous infection can save many lives, especially in pops w/ large frac previously infected. Would need reliable rapid test to screen for robust immune response, but benefit is big.
Conclusion: Paper suggests prioritizing elderly & seronegative people best for reducing deaths.
But need more analyses to examine R0<1.3 & which strategy minimizes hospitalizations, ICU. Also, still need actual data on vaccine effects on infectiousness!()

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More from @DiseaseEcology

14 Dec
Why do we exclude groups from vaccine trials (pregnant, lactating women, people w/ anaphylactic reactions) & then allow vaccination of them based on trials? Isn't this recipe for possibly very bad outcomes? Urgent remedy needed.
Thread
nytimes.com/2020/12/11/hea…
Pfizer/BioNtech vaccine was just granted EUA from FDA. EUA does not exclude any groups, except children under 16.
fda.gov/media/144412/d…
CDC met today & also recommended vaccination w/out clear exclusions for groups excluded (e.g. pregnant women).
cnbc.com/2020/12/12/cdc…
But who was excluded from phase 3 trial? Many groups!
Pregnant/breastfeeding women
History of anaphylaxis
Immunocompromised
Those being treated w/ corticosteriods
etc. Image
Read 8 tweets
14 Dec
What wildlife could be reservoirs for SARS-CoV-2?
New paper suggests North American big brown bats are not. Here's why this is important & why we need more studies like this.
Thread
onlinelibrary.wiley.com/doi/10.1111/tb…
We still don't know the natural reservoir for SARS-CoV-2. Some similar viruses were found in horseshoe bats (Rhinolophus spp.), but the difference between those viruses & SARS-CoV-2 is large enough that SARS-CoV-2 may have different reservoir.
ncbi.nlm.nih.gov/pmc/articles/P…
Regardless of where SARS-CoV-2 originally came from, many have worried that SARS-CoV-2 might be transmitted from humans into other animals that might be able to sustain the virus & transmit it back to humans.
Read 25 tweets
8 Dec
Vaccine distribution w/ fragile vaccine is hard.

Pfizer's vaccine needing a -80C freezer is making it hard to get it to the most needy people. And shipping containers of 975 doses are making it harder still.
Short thread
Everyone is understandably excited about Pfizer/BioNTech vaccine, w/ 95% efficacy against symptomatic cases (but data not so clear for severe infections: ). Now, we need to get it to the people most in need & fast.
Why fast? B/c there are 200K new cases/day in US (maybe 800K infections/day () & ~600K globally? About 0.5-1% of these infections will lead to death (
) a month from now. So time is critical & every day matters.
Read 7 tweets
8 Dec
FDA Pfizer/BioNTech vaccine efficacy results are great, but aren't nearly as great as presented for severe infections.
Everyone has seen fig below on cases in vaccine (blue) & placebo (red) over time.
Thread.

fda.gov/media/144245/d…
Key aspect of graph: x-axis. It shows days since dose 1 was given. As expected, no difference in total symptomatic cases in vaccine vs placebo for first 7-10d. It takes some time for vaccine to have any effect!
In fact, main reported efficacy of ~95% is for cases starting 7d after 2nd dose. Efficacy for earlier time points are lower: after dose 1, efficacy is 82%.

Why does this matter?
Read 11 tweets
3 Dec
What fraction of people have been infected w/ SARS-CoV-2?
Are cases in some states (e.g. ND) declining b/c they've reached herd immunity?
Some have suggested that a large fraction of the population in these states have been infected & this is important part of decline.
For example @trvrb recently shared @youyanggu estimate that 30% of ND was infected by Nov 8. There has been another 20K cases (+33% compared to 60K then), so this would suggest ~40% have been infected by now. But how are these calculations being done?
@youyanggu nicely provides details of his calculations here: covid19-projections.com/estimating-tru…
& how they result in a ratio of infections/case on a given day (ratio is assumed to decline over time) given a test positivity.
Read 12 tweets
2 Dec
Will vaccination of health care workers (HCWs) lead to accidental silent spreading of COVID-19?

Big possible downside to vaccine allocation recommendations w/out data on whether vaccines reduce infectiousness.
Thread
The justification for vaccinating HCWs is that they are at high risk of exposure from patients & if infected, removing them from workforce has huge impact on care for patients. So vaccinating them 1st seems like an obvious choice, right? Not w/ available data.
We currently know that 2 vaccines (Pfizer/BioNTech, Moderna) reduce symptomatic infections by ~95%. But we have zero data on whether they reduce infectiousness (& primate studies indicate vaccine didn't eliminate it: nejm.org/doi/pdf/10.105…; biorxiv.org/content/10.110…)
Read 11 tweets

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