Here is a good lesson in basic epidemiology

This data is difficult to interpret in a number of ways:
1. There is no denominator, either of institutions or populations
2. It counts the number of outbreaks, not cases
3. It doesn't tell you who had the infections

This matters

1/5
An extreme example of why this is important from earlier this year

After lots of excitement about outbreaks in schools it turned out the median number of children involved was...

Zero

2/5
For some denominator context there are:

- 24,000 schools (9 million pupils) not inc. university
- 11,000 care homes (410,000 residents)
- 117 prisons (79,000 prisoners)
- 26,000 restaurants (many not/partially open)

We are comparing apples and oranges

Epidemiology 101

3/5
These numbers are more useful for comparing relative trends over time, where educations settings have actually remained remarkably stable

Rates have unsurprisingly fallen in other locations which were closed over lockdown

But there is more to consider

4/5
Rates are high in secondary schools at the moment, lagging behind adult cases numbers which fell during lockdown (in Hubei kids numbers lagged 19d behind adults)

onlinelibrary.wiley.com/doi/10.1111/jp…

Hopefully this plus impending school holidays will help get numbers down again

5/5

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More from @apsmunro

11 Dec
It's time to clarify some things about children, schools and #COVID19 🧵

Summary: Young children seem significantly less susceptible, probably less likely to transmit. Less clear for teens. Schools mainly follow community trends, but secondary much higher risk than primary

1
The best way to determine susceptibility is through household contact tracing, as it controls for *exposure* - everyone gets more or less the same

There are many of these. Results vary, which we expect because infection is complicated

That's why we need to combine results

2
Here's 4 meta analyses; all find young children are much less susceptible than adults. Some that teens are too

Zhu (RR 0.6)
academic.oup.com/cid/advance-ar…

Goldstein (RR~0.5)
dx.doi.org/10.1093/infdis…

Viner (OR 0.41)
jamanetwork.com/journals/jamap…

Maidwell (RR ~0.5)
medrxiv.org/content/10.110…

3
Read 24 tweets
27 Nov
Really interesting pre print looking at school transmission in Northern Italy during the second surge

Suggests huge age dependant differences in risk of transmission in children in these settings (who would have guessed?!)

Let's take a look...

doi.org/10.1101/2020.1…

1/8
Detailed contact tracing of 43 cases
- 5 teachers
- 38 children

Whole classes tested regardless of symptoms, and swabbed a second time 10-14d later if the first was within 6 days of exposure

How much onward transmission?

2/8
Pre school (6 kids, 2 teachers) - 0/156 (0%)
Primary school (14 kids) - 1/266 (0.44%)
Secondary school (23 kids, 5 teachers) - 38/572 (6.64%)

Notice a pattern here?

3/8
Read 8 tweets
26 Nov
Some people are *still* lumping "children" all together in talking about transmission, schools etc

That is a dumb thing to do

It doesn't take a paediatrician to tell you a 2yr old is different from a 17yr old

Case study using data from the @ONS

ons.gov.uk/peoplepopulati…

1/8
The @ONS performs large scale, *random* population testing via rt-PCR

People often complain test data in children is biased by lower symptom burden - that is not the case for this data

Hence, it is very informative (why aren't more countries doing this?!)

2/8
Here is a graph of the last few weeks modelled incidence by age group

Huge initial spike in 17 - 24yr olds
Up behind then followed 12 - 16yr olds
Then 25 - 34yr olds
Then 35 - 49yr olds
Then 50 - 69yr olds

Eventually the 2 - 11yr olds get dragged up behind

3/8
Read 8 tweets
23 Nov
IT WORKS 🥳🎉

Great news from the Oxford/AZ vaccine phase III interim analysis today!

ovg.ox.ac.uk/news/oxford-un…

But if you thought you had questions after previous vaccine announcements, boy oh boy does this leave us wanting more!

Quick thread...

1/6
What are the interim results?

-131 cases in Brazil and the UK
-Overall efficacy 70% for the Oxford vaccine compare to control (MenACYW vaccine)
-No safety concerns identified

BUT

Split by dosing regime:
-2x high dose 62% effective
-Low dose then high dose 90% effective

2/6
That is a truly intriguing finding, and we'll need to see the breakdown of the data to understand the uncertainty around those estimates

I'll leave it for clever immunologists to theorise why a lower dose priming shot might be more effective

But wait, there's more...

3/6
Read 6 tweets
13 Nov
An absolute smorgasbord of data around children, schools and #COVID19 this week

We've got @PHE_uk , the @ONS survey, REACT study, and a new SAGE report!

Lets take a birds eye view of the key findings 🧵

1/17
First in @PHE_uk

Cases flattening in secondary age children after a sharp rise, rates still much lower in primary age

School outbreaks flat/declining (half term will have played a role here)

assets.publishing.service.gov.uk/government/upl…

2/17
Of course these tests are symptom based, and may miss cases due to lower symptom burden in children

Let's look at the UK's 2 big, random sample studies which overcome this issue!

3/17
Read 17 tweets
10 Nov
This is a phenomenal statement from @ADPHUK

One disheartening thing about some of the scientific communications during the pandemic has been a painfully narrow view

None of that here

A holistic, considered and progressive approach to management of the pandemic

1/5
First, focus on a combination strategy

Stop focussing on silver bullets or game changers and start getting the basics right. Promote good public health messages. Support test/trace/isolate.

Complex problems don't have simple one stop solutions

2/5
Second, win HEARTS and MINDS

Foster trust, goodwill and collaboration (hint; this is NOT achieved by punishment, shaming and fearmongering, no matter how many ❤️🔁 it gets)

**Protect communities**

Amazing document outlining these strategies here

adph.org.uk/wp-content/upl…

3/5
Read 5 tweets

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