New data on the @my_helix SARS-CoV-2 dashboard, which is still focused on B117 variant.
Link: public.tableau.com/profile/helix6…
Thread with specific analysis in California & Florida.
Link: public.tableau.com/profile/helix6…
Thread with specific analysis in California & Florida.
2/ Methods
All numbers are based on positives with Ct<27 for N gene.
Tracking 2 metrics to estimate % of positives that are B117:
- (n SGTF) / (n positives)
- (n B117) / (n SGTF sequenced)
Latest sample collection date:
for SGTF: Jan 22
for sequencing: Jan 15
All numbers are based on positives with Ct<27 for N gene.
Tracking 2 metrics to estimate % of positives that are B117:
- (n SGTF) / (n positives)
- (n B117) / (n SGTF sequenced)
Latest sample collection date:
for SGTF: Jan 22
for sequencing: Jan 15
3/ CA results
Latest 7 day moving average:
- (n SGTF) / (n positives) ~ 0.015
- (n B117) / (n SGTF sequenced) ~ 0.95
estimate: 1.4% of positive cases in CA are B117. Trending up.
@EricTopol
Latest 7 day moving average:
- (n SGTF) / (n positives) ~ 0.015
- (n B117) / (n SGTF sequenced) ~ 0.95
estimate: 1.4% of positive cases in CA are B117. Trending up.
@EricTopol
4/ FL results
Latest 7 day moving average:
- (n SGTF) / (n positives) ~ 0.04
- (n B117) / (n SGTF sequenced) ~ 0.61
estimate: 2.4% of positive cases in FL are B117. Trending up.
Latest 7 day moving average:
- (n SGTF) / (n positives) ~ 0.04
- (n B117) / (n SGTF sequenced) ~ 0.61
estimate: 2.4% of positive cases in FL are B117. Trending up.
5/
Another state where numbers seem to be going up is Georgia. There may be others that we are not seeing with @my_helix testing.
As mentioned before, we are increasing the sequencing of random positive (not SGTF). In this picture, you can see the numbers up to Jan 15.
Another state where numbers seem to be going up is Georgia. There may be others that we are not seeing with @my_helix testing.
As mentioned before, we are increasing the sequencing of random positive (not SGTF). In this picture, you can see the numbers up to Jan 15.
6/
I am still learning about viruses, so I stay away from interpreting too much these numbers.
Grateful to learn from experts like @K_G_Andersen & his lab. As well as many on Twitter @firefoxx66 @trvrb @ewanbirney
& credit to @my_helix science teams for all of these results.
I am still learning about viruses, so I stay away from interpreting too much these numbers.
Grateful to learn from experts like @K_G_Andersen & his lab. As well as many on Twitter @firefoxx66 @trvrb @ewanbirney
& credit to @my_helix science teams for all of these results.
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