Is 6' of space required to keep kids safe in schools, or is 3' enough?
One of the most important questions for re-opening schools safely.
Thread
tl;dr New paper suggests 3' is enough, but paper is fraught with issues & is unconvincing, even though I really wanted it to be right.
Background
SARS-COV-2 transmission in children has been one of the most contentious issues of the pandemic. Schools were closed in most of the world in early 2020 b/c kids play a big role in influenza transmission & without info, same was assumed for SARS-COV-2.
A mountain of evidence now shows that cases/infections in children (especially <10yr) are often (but not always) less likely to be detected than in adults & kids transmit less often. There's many issues w/ these data, but no time for that here (need to write big review thread).
Evidence also shows that kids of all ages CAN become infected & transmit - key Q is whether they do it at equal rates as adults?
There have also been many outbreaks of COVID-19 in schools globally. Follow @DrZoeHyde to see a never ending stream of these reports.
This has led to even the most strident proponents of kids playing minor role in transmission (e.g. @apsmunro) acknowledging that kids can get infected & transmit if no precautions are taken. I'd venture a guess (a hope?) that all reasonable scientists would admit this.
Thus, the CDC, in trying to offer guidance on school re-opening (cdc.gov/coronavirus/20…) has suggested that schools focus on 2 things: masks & 6' distance. They list 3 other (mostly useless) things & neglect ventilation (@jljcolorado@linseymarr@zeynep). But I digress...
The biggest, most important thing CDC recommended was 6'. Why? Because all public schools can require masks but most (nearly all) CANNOT provide in-person schooling at normal capacity & provide 6' space b/w students. There simply isn't building space.
This has led to a lose-lose set of options including hybrid classes, double-day classes, every other day classes, etc., which have been tough for students, teachers & parents w/ possibly no benefit in terms of reduced risk due to cohort switching. A bit of a disaster, really.
A big ongoing Q has been, is 6' needed? Would 3' be enough if students were all wearing masks? What does "enough" mean?
I *really* wanted this paper to be convincing. It would help so many children to be able to return to school. But...
There are some really big issues: 1) Authors implicitly define "safe enough" to mean: if incidence isn't statistically significantly higher in school districts w/ 3'+ rule than 6'+ then no need for 6'+. But a lack of a significant difference can arise from many things. @bolkerb
Biggest issue is lots of "noise" in data can lead to no "significant" effect even if one exists. How big is that issue here? Big.
Instead of asking if diff is significant, one can simply look at key estimated effect. Incidence in 6'+ districts was 0.789 (0.528-1.179) that in 3'+.
What does that mean? It means incidence was estimated to be 21% lower in districts w/ 6'+ rule than 3'+ rule. This difference wasn't "significant" b/c the uncertainty in the estimate was big. In fact, data suggests incidence ratio could be 47% lower to 18% higher (95% CI limits).
In other words, 6' might make schools MUCH safer than 3'-incidence might be twice as high!- or it might make no difference at all (or paradoxically, slightly riskier). Data are too noisy for us to be confident in comparison. Analyses also have many issues (too technical for twit)
Big issue #2) Focal metric in study is incidence (# of COVID-19 cases reported to state). That's not what we actually care about. We care about # of transmission events in class rooms that have 3' or 6' of space b/w students. Study has 0 data on where infections occurred.
Incidence in staff are highly correlated w/ community incidence; incidence in students is more weakly correlated w/ comm. incid. Strangely, both flatten as community incidence spikes. More precautions? Closures?
Overall, can't tell how much transmission at school.
Many other questions/issues
-Incidence is based on cases reported to state, which, presumably are mostly symptomatic cases. Cases in children are often mild & most are missed, so incidence is small fraction of infections. This omission adds noise to comparison.
-Comparison is of school districts, not schools. Incidence is based on County level data, not from individual schools or districts.
-No data on actual distance (6',3') used; just school plans
-Schools were included even if attendance was extremely low (anything >5% was included).
Given these (& MANY other issues), what should we make of the results?
-If we want to get schools open at full capacity, ignore issues & use 3' & say it's supported by "peer reviewed science" (this paper is published). I'm certain many people/districts/states will do this.
-If we want to actually know if risk/transmission is higher w/ 3' than 6', do a more careful study:
-Get data from case investigations
-Find out how many actual transmission events occurred at schools w/ 3' & 6'
-Analyze the data properly; look at effect sizes, not significance
So, while I appreciate authors' attempts to address this VERY IMPORTANT issue, evidence in this study gives me essentially no confidence in boldly stated conclusions & makes me doubt authors' judgement & basic understanding of statistics. Study seems more propaganda than science.
This is despite me very much wanting to believe the conclusions of the paper.
I'll note that the conclusions may, in fact, be correct (i.e. 3' may be no more risky than 6'). But the evidence here simply doesn't measure up to a very basic level of scrutiny.
Apparently Dr. Fauci found it more convincing than I did (but I doubt he's actually read the paper).
Just for clarification, overall, evidence I've seen suggests that schools are relatively safe as long as key measures are in place (masks & ventilation being most important; distance helps too; hygiene less so). I'd open schools under most circumstances, including most of US now.
However, I wouldn't shrink 6' to 3' based on the evidence in this paper. I'd use 3' based on the overall levels of transmission seen in schools that have used masks & ventilation but couldn't do 6'.
In addition, I'd argue having in-person classes is worth some additional risk. But how much is too much? Difficult question. Paper suggests non-significant 10-20% higher risk (& CI includes 50% & -33%). Is that too much? Not to me but I'd want any decision made to reflect that.
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CONFLICTING DATA:
-SARS-CoV-2 variants mutate & evade immune system & cause huge epidemics via re-infection (nytimes.com/2021/03/01/hea…) @nmrfaria
-T-cells play key role in disease severity & are robust to same mutations
Background
With waves of cases subsiding & development of many vaccines for COVID-19, many hoped we'd be past the worst of the pandemic (at least those countries w/ access to vaccines). nytimes.com/interactive/20…
One important correction (I need to write a full thread about).
NONE of the vaccines are 100% protective effective against hospitalizations & death. We know this from vaccine rollout (DOI: 10.1056/NEJMoa2101765).
(cont)
None of the trials are big enough or long enough to accurately measure efficacy against death or even hospitalizations. In huge J&J trial hospitalization was 16 vs 0 which gives a CI of 74%-100%. 16 events is simply too small to say protection is 100% & we know it's not.
We need to be careful about how we describe these vaccines b/c otherwise the public will wonder: if all vaccines have 100% protection against hospitalization & deaths, then why are some of the 50M vaccinated people getting hospitalized & dying of COVID-19?
New paper on biases in epi studies led by @AccorsiEmma
w/ @mlipsitch & many others.
Paper is extremely valuable in thinking carefully about how to interpret data. Sadly, *most* epi papers have failed to account for most of the biases they discuss.
S thread link.springer.com/article/10.100…
Two big examples: 1) Efficacy of vaccination from observational studies 2) Studies of susceptibility & infectiousness based on secondary attack rate (SAR) data
1) Randomized control trials are the gold standard for assessing the efficacy of vaccines (& lots of other things, of course), because, theoretically*, people are randomized b/w vaccine & placebo groups.
Observation studies of vaccine efficacy (VE) aren't randomized, so,...
N(orth)-S(outh) gradients in Lyme disease in US
Very interesting new paper on causes of the sharp N-S gradient in Lyme disease in US
Thread journals.plos.org/plosbiology/ar…
Background
There is a huge gradient in Lyme disease incidence in the eastern US, but no simple explanation. The main tick (I. scap.) is present from ME to FL, as are key reservoir hosts (mice, shrews).
Multiple hypotheses have been proposed for this N-S gradient, including:
-a gradient in host species diversity that results in fewer ticks feeding on the most infectious hosts (called "the dilution effect")
-a gradient in selective feeding by ticks on hosts
(cont)
Real-world Pfizer vaccine (& natural infection) efficacy against sars-cov-2 INFECTION
New Lancet paper posted today with fantastic data. papers.ssrn.com/sol3/papers.cf…
Short Thread
tl;dr 1 dose reduces infection 72% on day 21; 7d post 2nd dose, 86%; previous infection 90%
Solid study design (for observational study)
Study of 23K health care workers in England, w/ PCR testing every 2 wks + rapid tests 2x/week & PCR confirmation of + rapid tests. 35% seropositive at start.
Vaccine hesitancy was higher in previously exposed, young, women, black (much lower), poorer.
What is the relative risk of indoor vs outdoor dining?
COVID-19 cases are falling and indoor dining has resumed in NYC & elsewhere.
It should be possible to quantify the relative risk of indoor vs outdoor dining.
Thread nytimes.com/2021/02/12/nyr…
Many people argue that indoor dining represents a high risk for transmission of SARS-CoV-2, b/c people can't wear masks while eating, people from multiple households often sit at 1 table & at least 2 case studies show cross-table transmission is possible. jkms.org/DOIx.php?id=10…
Outdoor dining is thought to be (much) safer, due to much higher ventilation. But we still don't know the relative risk of indoor vs outdoor dining, which would be extremely valuable in determining the relative risk of re-opening these activities.