For people who talk about boys crying wolf...actually the boy has been pretty restrained regarding variants. Remember iota or kappa?

This one is different

thetimes.co.uk/article/b30489…
Those other variants in full:

1. Alpha, the Kent variant. In November of 2020, amid a national lockdown, cases started rising in Sheppey. Everyone thought it was just people in Sheppey doing Sheppey things. Turned out it wasn't. It was a 50 per cent more transmissible variant
(here is the definitive report:reuters.com/investigates/s…)

Verdict: scariant
Beta variant: Found in South Africa at the same time as the alpha variant. Good at evading immunity, less good at transmitting. Caused a terrible wave in SA, but beaten into subsmission by Blighty's world-beating variant.

Verdict: scariant
Gamma: First spotted in Brazil, where it caused a wave in Manaus. This was interesting, in an awful way, because Manaus' first wave had been among the worst in the world. Some immune evasion likely (but how much is controversial).

Verdict: scariant

thetimes.co.uk/article/how-wi…
4. Delta

Remember how at Christmas last year people talked about the Indian anomaly, and how it seemed to have escaped the worst of covid? Maybe they had better immunity? Maybe it was to do with not locking down?

Then came delta. And then delta conquered the world.

Scariant
(spot the continent going down in that graph😬)
Now we are into the more hipster variants.

Epsilon: Showed promise in the lab, five solid spike protein mutations, had a strong summer 2020 in the US. Ultimately couldn't hack the competition. Last seen in July, gone the way of the dodo.
Zeta: Independently evolved the E484K mutation that appears so good at getting around immunity. Interesting example of convergent evolution. Popped up in Rio at the same time as Gamma - but just didn't have the edge. Crushingly, the WHO describes as "Former Variant of Interest"
Eta: should clearly be represented with an E, instead the crazy greeks use an H. In similar fashion, it should clearly have been a scariant - with mutations shared with gamma and alpha - but turned out to be a not-iant.
Iota: in its pomp, this variant claimed 1 in 4 infections in New York. Back in February 2021, the world was at its feet. It seeded 18 countries. But delta was too strong.

Extinct-iant

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More from @whippletom

26 Jul
And on this edifying note, I'm signing out of twitter. I'm off on much-delayed paternity leave. I was meant to do it last year, but decided to delay until the pandemic was over. Not tweeting until the autumn.

In the meantime, everyone is cross. Here is covid stuff that's great:
The covid dashboard, coronavurus.data.gov.uk, by @Pouriaaa and @statsgeekclare and doubtless loads of others. Clear, invaluable and does exactly what it should.
The variant technical group, with @meera_chand , @jcbarret, @PHE_uk and others. Absolutely stunning. Basically mathematical witchcraft, calculating all the crucial efficacy and transmissibility data on the fly, amid massive uncertainty google.com/url?sa=t&sourc…
Read 13 tweets
7 Feb
Demographics of the South African study into Oxford vaccine
Criteria for mild or moderate cases
Neutralization data - immune responses "similar if not better"
Read 14 tweets
5 Feb
Sage has released its reasonable worst case scenarios for winter resurgence, as envisaged in July. Looks like we are teetering towards the unreasonable worst case scenarios...
They were especially worried about: schools and universities, importation from holidays abroad
One key recommendation for mitigating it: better support for those isolating
Read 5 tweets
25 Mar 20
Of all the pieces I've written on coronavirus, this is perhaps the most surprising. Vaccine researchers are *still* wasting time writing grant applications rather than getting on with work. 1/x thetimes.co.uk/article/vaccin…
CEPI, who fund eight candidate vaccines, run out of money in a couple of weeks.
It is entirely possible we will get a working vaccine, but because of a lack of funds to research scaling up production, we won't be able to make it.
Read 5 tweets
20 Mar 20
The UK government has just published its scientific evidence and it's....amazing gov.uk/government/gro…
Risk of public disorder. "agreed that large scale rioting is unlikely. It is rarely seen in these circumstances. Acts
of altruism will predominate, and HMG could readily promote and guide these." assets.publishing.service.gov.uk/government/upl…
A modern keep calm and carry on:

"Promote a sense of collectivism: All messaging should reinforce a sense of community, that
“we are all in this together.” This will avoid increasing tensions between different groups "
Read 18 tweets
16 Mar 20
Best guess 35-50k people infected.
(currently infected)
"Closing schools would have some effect at reducing transmission. Closing schools on its own will have a significant effect on healthcare capacity.

If I was to guess, it is quite likely to happen"
Read 16 tweets

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