So sad to see you of all people, @RichardDawkins, being taken in by and amplifying the antiscientific misinformation and disinformation put out by @mattwridley regarding the origin of #SARSCoV2.
1/
If you'd be willing to read some of the scientific literature that would put you in a position to assess whether Matt is balanced and fair-minded, here are a 3 recommendations. (Also, I would encourage you to read Matt's tweets on the subject, and see how balanced they are.)
2/
Paper # is a stunning study led by Xiao Xiao and Zhaomin Zhou, with our Oxford Zoology colleagues @WildCRU_Ox. It put the lie to the Chinese delegation's assertion in the WHO-China report that no live, illegal wildlife was sold at Huanan Market.
3/

nature.com/articles/s4159…
This was crucial - it connected (1) the epidemiological evidence that *many* of the earliest COVID cases were people who worked at Huanan Market with (2) animals, such as raccoon dogs, which we know from SARS1 can be the conduit between bats and humans.
4/
There were just four places in Wuhan that illegal live wildlife including raccoon dogs was sold. One, the ground floor of the western section of Huanan Market (where almost all the Huanan COVID cases in December 2019 worked) is about 150m by 70m.
5/
It boggles my mind that *any* scientist could ignore, downplay or dismiss just how strongly the combination of points 1 and 2 above point to the Huanan Market as the spot where this virus first jumped to humans.
6/
It is a soccer field sized area, with perhaps just several hundred workers, in a city of 11 million! Run a quick Chi-squared test on finding 1/3 to 1/2 of the earliest cases among these hundreds of workers, versus the other 11 million inhabitants of the city.
7/
I haven't read Viral, but I would guess that these points are not adequately addressed. I do follow Matt on twitter, and I do not recall these points being properly addressed. Just the opposite.
8/
I also follow his co-author, @Ayjchan who has derided and rejected the notion of raccoon dogs being involved in the origin of SARS-CoV-2






9/
"Where is the mythical accumulating evidence for a natural origin of SARS2?"

"There's a lot of people talking about raccoon dogs and frozen ferret badgers, but they got nothing - absolute zero evidence for a natural origin of SARS2 in Wuhan."
10/
This is "balanced and fair-minded" like Murdoch-owned Fox News is "Fair and Balanced". Very apt turn of phrase indeed!

Paper #2 is one of my own, a peer-reviewed paper that came out recently in @ScienceMagazine.
11/
science.org/doi/10.1126/sc…
There are two main points: one is that the pattern whereby many of the earliest COVID cases in Wuhan worked at or visited the market is *not* a mirage caused by ascertainment bias.
12/
Others have dismissed the preponderance of early cases linked to Huanan as the product of biased case finding: maybe everyone was looking really hard for cases linked to this market and ignoring or missing unlinked cases.

Simply not true.
13/
This pattern was present *before* anyone could possibly have been looking for cases linked to Huanan Market.
Doctors at the hospital that worked out that this was a new viral outbreak identified patients by unusual "ground glass opacities" in CT images of the their lungs.
14/
They were on the lookout for *any* pneumonia patient with this tell-tale sign. Indeed, the first 3 patients discovered had no link to the market.

So *of course* they were not missing or ignoring cases unlinked to the market.
15/
Yet 4 of the first 7 patients they discovered, from Dec 27-29, worked at Huanan Market.

At another hospital, 7 patients were also identified as suffering from unexplained pneumonia from Dec 18-28. There, too, 4 of the 7 worked at Huanan Market.
16/
Notably, the link to Huanan was not known until after the patients were diagnosed.

So at these two hospitals, before it would even have been *possible* to "cherry pick" cases linked to Huanan and ignore others, more than 50% of the first known patients were linked to Huanan.
17/
While, all things being equal, we would expect to see 0% of cases linked to this one workplace in a city of the size of NYC, we see 33% to more than 50%.

The second main point of the paper is captured in this figure from it:
18/
The blue dots are home address locations of cases in December that were known *not* to be linked to Huanan Market (didn't work there, didn't visit).

But these, too, cluster around the market quite strongly.
19/
This is not at all what you should expect if the virus was circulating in the community and then moved to this soccer field-sized market. Rather, it speaks strongly to the likelihood that the pandemic started there then moved into the nearby, then larger, Wuhan community.
20/
Finally, paper #3, a much abused and misunderstood study led by Joel Wertheim and first-authored by @jepekar, on which I am also an author. This one is relevant to much of the disinformation and misinformation promulgated by Matt and many others.
21/

science.org/doi/10.1126/sc…
We estimated the date of the very first human infection in Wuhan/Hubei (and almost certainly the world).

Within the range of plausible dates, we *never* see anything in September. October at the earliest, more likely November, centered on the second half of the month.
22/
Yet Matt - I gather from reviews such as the one here - gets some mileage (and I guess sales) from the internet-reared theory that the removal of a database supposedly taken offline on Sept 12 by the Wuhan Institute of Virology was a sinister act.
23/

newrepublic.com/article/164688…
Has Matt reckoned with the fact that our study conclusively refutes that (very damaging) idea? Does it really strike you as balanced and fair-minded to hide from readers and subscribers relevant findings published in @ScienceMagazine while promoting internet hokum?
24/
And what is interesting about that paper is that lab leak proponents like Matt are well aware of it, and have misused it to dismiss (incorrectly) the conclusions of my Science Perspective (Paper #2).
25/
It shows doctors in Wuhan did not notice the earliest cases of COVID until mid-December. And that the earliest onset case became ill on Dec 10. And that there really was a preponderance of early cases linked to the market, and even unlinked cases lived close to Huanan.
26/
Leak leak proponents have painted themselves into a corner by pointing to Pekar et al (paper #3) to suggest that the China is somehow hiding a plethora of earlier cases and that our paper #3 shows the pandemic was going on for months before all those Huanan cases.
27/
But have a close look at the paper:
The viral genomes from Wuhan shared a most recent common ancestor only in late November or early December. And the primary (very first) human case was likely infected in the second half of November.
28/
But here's the real kicker: we were *really* curious about how many infections likely occurred before Dec 1. So we scienced it pretty hard. The median number of people infected in Wuhan by Dec 1 was nine. Nine!
29/
So what we showed, to those who actually read the paper, along with paper #2, was that THERE IS NO TROVE OF EARLY CASES THAT CHINESE AUTHORITIES ARE HIDING.

Sorry to raise my voice, but it is very frustrating to have hard-won scientific findings distorted in this way.
30/
You will not hear any of this science from Matt, as he is neither balanced nor fair-minded on this subject. And far from being authoritative, he is some mix of ignorant and disingenuous. In a word, antiscientific.
31/
His cringeworthy self-promotion needs no assistance from you @RichardDawkins. For someone I know cares deeply about science, it is such a shame that you've been drawn into amplifying a voice that is so antithetical to the science on this subject.
32/
Great to keep an open mind, for sure. And I have strived to do so on #SARSCoV2 origins, including by proposing and signing this statement in @ScienceMagazine.
33/

science.org/doi/10.1126/sc…
But as I'm pretty sure you have said yourself, you don't want to be so open-minded that your brain falls out.
34/34

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More from @MichaelWorobey

16 Dec
🚨🚨🚨
Wow. Huge development. SARS-related CoVs in bats in Europe just one mutation away from a polybasic furin cleavage at S1/S2.

And these very bat samples might contain low-frequency variants *with* functional FCS.
1/

biorxiv.org/content/10.110…
This is work led by @c_drosten and Jan Felix Drexler, and congrats to first author @ana_lenina, and the other co-authors.

Quick background: SARS-CoV-2 is unique among SARSr-CoVs in having a short stretch of basic amino acids in its Spike protein, the FCS,
2/
This motif allows SC2 to infect lung cells and is likely a key to this virus's high transmissability. It is the secret sauce that allowed it to become a pandemic pathogen (along with other features like Spike's ability to bind well to proteins on human cells)
3/
Read 21 tweets
15 Dec
Intemperate attacks? No, @mattwridley, it is not at all intemperate to call you out as I did. It needs to happen more often. Says the purveyor of disinformation, "how DARE you accuse me of spreading disinformation!"

Time's up on that.
1/
You take issue with this tweet of mine:
2/
But what I say is simply and demonstrably true, as your own tweets illustrate. To deny this, as you have, is just further disinformation:
3/ Image
Read 9 tweets
15 Dec
Very glad you raised this @bencowling88!

First, 9 infections by Dec 1 is the median, but the 95% HPD included 26 cases.

Second, and more importantly, I think this issue here is doubling time. Your paper below estimated a doubling time in Wuhan of 8.7 days.
1/
The fullness of time has shown that is unrealistically slow. Based on Bao et al, we estimated a median 4.1 day doubling time in Wuhan in Jan-Feb.

Nov-Dec, before anyone know what was going on, the epidemic would likely have been doubling even quicker.
2/

nature.com/articles/s4158…
Probably less than every 3 days.

But take 100 cases by Dec 1. Even assuming a 4.1 day doubling time, you're looking at 7-8 doublings in December. That means 12,800 to 25,600 infections. The WHO-China report reports 168 cases in Wuhan with symptom onset before Dec 31.
3/
Read 7 tweets
12 Dec
"Chinese Scientist Hits Back at [my ] Wuhan market coronavirus origin paper"

Dr. Liang Wannian, the lead scientist on the WHO-China study on SC2's origin, has badly misunderstood or misrepresented the science here. Some thoughts in a 🧵, 1/33

scmp.com/news/china/sci…
What is clear to me from Liang's comments is that the Chinese regime is *deeply* fearful of the strong evidence that places the origin of the pandemic at Huanan Market. But first it is incumbent upon me to acknowledge that he raises one important point. 2/
Although it was a tangential point in my paper in @ScienceMagazine (see below), Liang asserts that the earliest known case *was* a Mr Chen, an accountant with no connection to Huanan Market, with symptom onset of Dec 8, not 16. 3/
science.org/doi/10.1126/sc…
Read 35 tweets
11 Dec
Short 🧵
No, it's not just as risky @ydeigin.
This ridiculous comment captures perfectly a growing concern I have. A much-needed discussion about making pathogen research as safe as possible is getting hijacked by the SARS-CoV-2 origin debate. 1/
People who lack expertise can sometimes make important contributions. But often those with expertise are in a better position to do so.

My daughter is going to have a complicated surgery soon, and I would like her surgeon to decide how to do it as safely as possible. 2/
I am relying on the surgeon's expertise and experience to inform his sense of proportion, something that is lacking in many believers in a lab leak origin of SARS-CoV-2 when it comes to lab safety. 3/
Read 7 tweets
27 Nov
1 of 9: Thank you SO MUCH @profvrr, Kathy Spindler, and @alandove for your excellent discussion of my recent COVID origins Perspective in @ScienceMagazine

science.org/doi/10.1126/sc…

on TWiV (This Week in Virology)
2: You hit on key points I wanted people to take home, especially that there really was a preponderance of early COVID cases linked to Huanan Market and this can't be dismissed as ascertainment bias (undue searching for cases linked to the market, while ignoring unlinked cases).
3: This, along with the fact that if the pandemic started there you should *expect* to see some cases unlinked to the market early on as people were infected then moved the virus into the nearby community, points squarely at the market as the overwhelmingly likely site of origin.
Read 10 tweets

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