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15 Dec, 12 tweets, 3 min read
Most people see a meteor as the ultimate symbol of mass extinction, in reality though we should be looking at oxygen the same way

The first major extinction event on earth was known as the great oxidation event and occurred as a result of increased O2 in the atmosphere

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At this point the earth was still covered in single-celled organisms

Opportunistic cyanobacteria developed photosynthesis as a way to leverage the abundant CO2 in the atmosphere for energy production, however the fundamental metabolism of other cells wasn't configured for this
Molecular oxygen is highly reactive with certain forms of minerals, particularly the water-soluble ferrous form of iron

This reactivity leads to the creation of a cascade of free radicals in response to the formation of iron oxide, I've discussed this often in health/disease
At the time the organism the existed were used to a high CO2 atmosphere which actually creates a "reducing" environment fundamentally opposed to oxidation

As a result they had less antioxidant production and their metabolism was more permissive of the use of ferrous iron
When oxygen levels increased, however, this was disastrous

This resulted in the extinction of roughly 90% of organisms on earth, mostly composed of the non-photosynthetic organisms
The echoes of this extinction can still be seen in cells and mitochondria today

Mitochondria are particularly interesting here in that they were previously prokaryotic bacteria themselves, and their ancestors survived this oxidation event
We can still see the adaptations to this high-oxygen environment in their use of copper as an "electron switch" for iron

In modern organisms copper acts as either an electron donor or acceptor to convert iron from the ferrous form to the insoluble ferric form and vice versa
Iron is transported in the ferric form to limit its reactivity, then it is reconverted to the ferrous form in hemoglobin to allow it to bind to oxygen to transport it

In mitochondria, we see a microcosm of this in the enzyme cytochrome C oxidase which uses copper and iron cores
Mitochondria also display all the enzymes necessary to synthesize melatonin, one of the most potent antioxidants found in nature

We know melatonin mostly as a hormone, however its role as an antioxidant is billions of years old and still occurs today in both plants and animals
Melatonin is amphiphilic, meaning it is soluble in both lipids (cell membranes) and water (cytosol), so it is able to protect all parts of the cell

It also can be used as an antioxidant multiple times in a row before it is used up
I would go so far as to argue that other core signaling molecules like serotonin may have even developed out of their presence as precursors to melatonin

Originally serotonin signaling probably consisted of it binding to and modifying proteins (called serotonylation)
All in all mitochondria are exquisitely tuned to their electron environment

They leverage it both as an abundant and efficient energy source, and to protect themselves from the natural tendency of their cellular machinery to break down over time

I find this all truly amazing

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More from @ck_eternity_

25 Nov
Have you ever notice you get really sleepy after a big Thanksgiving meal?

This is what I like to call the "Thanksgiving dinner effect," it occurs as a result of a large meal containing high carbs and protein, particularly turkey

(thread)
Turkey is one of the foods highest in the amino acid tryptophan, which also happens to be the precursor to the neurotransmitters serotonin and melatonin

Tryptophan > 5HTP > serotonin > melatonin
For this cascade to occur in the brain, tryptophan must first cross the blood brain barrier, which regulates which substances enter the nervous system

Amino acids are able to pass through it, but particularly if insulin is present at the same time
ncbi.nlm.nih.gov/pmc/articles/P…
Read 6 tweets
23 Nov
While anemia is a risk factor for hair loss, interestingly enough so is iron overload

One of the first symptoms of hereditary hemochromatosis is hair loss, and this even seems to occur via similar mechanisms to androgenic alopecia
Androgen receptor activation in the scalp seems to trigger hair loss either partially or primarily via a signaling cascade involving TGF-beta

I've found a number of studies linking androgen receptor activation and TGF-beta in general, and they seem to potentiate each other
My impression is that this depends on the tissue the receptor is present in, having more influence in scalp and prostate, but not as much in other tissues

It may even explain why AR activation promotes body hair growth by not scalp hair growth, though this is mostly speculation
Read 8 tweets
22 Nov
Alzheimer's disorder is often referred to as a metabolic disorder ("type III diabetes"), but I've come to view it as a circadian disorder

Disrupted circadian rhythm = rapid insulin resistance, combined with inability to clear amyloid plaques with glymphatic function impaired
This is in combination with other factors of course, neurodegeneration doesn't develop overnight

It does raise the question of how crucial of a role melatonin and sunlight play in the prevention of neurodegeneration, I'll link a few interesting articles below
Melatonin regulates Aβ production/clearance balance and Aβ neurotoxicity: A potential therapeutic molecule for Alzheimer's disease
pubmed.ncbi.nlm.nih.gov/33254429/
Read 5 tweets
16 Nov
Normally in undermethylation we see decreased levels of serotonin and dopamine activity at their receptors, since higher levels of DNA methylation can inhibit the reuptake of these neurotransmitters

This "mimics" the effects of SSRIs and DRIs to some extent

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However this can also be paired with more adrenaline and noradrenaline through a separate mechanism, where methyl groups are required to metabolize adrenaline

Because of this when methyl groups are depleted we see lower levels of metanephrine, an adrenaline metabolite
One of the main causes of niacin toxicity is the depletion of methyl groups, since niacin forms methyl-nicotinamide in the liver

This is paired with more adrenaline/noradrenaline, less betaine (a methyl donor in the liver), and high levels of homocysteine
nature.com/articles/hr201…
Read 13 tweets
16 Nov
Niacin deficieny causes tryptophan to be funneled away from serotonin production into endogenous niacin production

Some of the intermediates in the conversion are neurotoxic, especially quinolinic acid which imitates excess glutamate Image
This is often implicated in schizophrenia pathology

These intermediates are created due to lack of niacin stemming from dietary deficiency or higher demand to drive essential reactions like NAD+ creations
Reducing the formation of quinolinic and kynurenic acids is also one of the mechanisms through which niacin supplementation significantly improves some cases of schizophrenia

This seems to be especially useful in cases of overmethylation
Read 4 tweets
26 Oct
If we look at the structure of cytochrome C oxidase, the rate limiting protein in energy production in mitochondria, it becomes obvious why light is so important

The heme and copper cores act as chromophores absorbing light and using it to excite electron transfer
If we compare the structure of chlorophyll (left) with hemoglobin (right) there is a distinct similarity

Both contain similar structures that harness light to drive redox reactions, this works via the photoelectric effect where the energy of light is transferred into electrons
Cytochrome C oxidase is the last protein in the electron transport chain, which operates by using a current of electrons to drive ATP production

It's absorption peaks in the 630-670nm range, red light, which is the part of the spectrum that penetrates the farthest into the body
Read 6 tweets

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