I fully agree that the single best action individuals (and governments) can be taking to reduce impact of the Omicron wave is to get booster dose if already vaccinated and to get vaccinated if not. 1/14
However, I absolutely think we need to be moving forward with clinical trials for a possible future swap to an Omicron-specific or bivalent vaccine (nytimes.com/2021/12/20/hea…). 2/14
Given rapid spread there's no possibility of having an Omicron-specific vaccine ahead of the wave, and a booster with the original formulation is shown to produce good neutralization titers against Omicron and largely restore effectiveness against symptomatic disease. 3/14
In neutralization assays, @BalazsLab observes only a 4-fold or 6-fold reduction in titer going from wild-type to Omicron after booster relative to 43-fold or 122-fold after initial mRNA vaccine series (medrxiv.org/content/10.110…). 4/14
Early data from @UKHSA technical report #31 shows that vaccine effectiveness against symptomatic illness after booster is reduced from ~95% against Delta to ~75% against Omicron (gov.uk/government/pub…). 5/14
A 4 to 6-fold reduction in neutralization titer or a ~20% drop in vaccine effectiveness against symptomatic illness is really not bad and I'm happy boosters broaden immunity as much as they do. 6/14
However, in advocating for clinical trials for Omicron booster, I'm really thinking of 9 months down the line. Due to seasonality, waning immunity and further evolution of Delta and Omicron, we will very likely face a SARS-CoV-2 wave in winter 2022-2023. 7/14
Like with seasonal influenza vaccines, we'll want vaccines being deployed to closely match circulating viruses and come September it's very possible we'll have descendants of Omicron, Delta or both circulating. 8/14
There will be vaccines being administered in Sep 2022 that will be first doses for some individuals, third doses for others and (conceivably) fourth doses for others still. Having antigen closely match circulating viruses is beneficial for each of these circumstances. 9/14
Given potential for Delta / Omicron co-circulation as well as displacement, I believe clinical trials should compare immune responses to wild-type boost, Omicron-only boost and bivalent wild-type / Omicron boost. 10/14
We may well decide to stick with wild-type vaccine, but we need to conduct these trials in order to make a decision informed by data on the potential improvement in breadth of immune response. 11/14
There are a couple additional benefits to conducting these trials:
1. We can push forward scientific understanding of immunization with different antigenically distinct SARS-CoV-2 strains, as strain update will eventually be necessary
12/14
2. We can better lay groundwork for a rapid vaccine update in the potential future scenario of an Omicron-like variant that emerges but with increased severity
13/14
mRNA vaccines in particular have the potential to be rapidly updated to respond to viral evolution. We're going to be dealing with an evolving SARS-CoV-2 for the foreseeable future. We should tailor our vaccines accordingly. 14/14

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More from @trvrb

17 Dec
The extremely rapid rate of spread of Omicron clearly visible since the beginning of December will now be acutely felt in many geographies as local epidemics amplify to the point of eclipsing Delta circulation. 1/12
Continuing previous methods, if we partition case counts from @OurWorldInData using sequence data from @GISAID and apply a modeling approach from @marlinfiggins we get rapid rises in Omicron cases in South Africa, Denmark, Germany, the UK and the US. 2/12
This corresponds to rates epidemic doubling of between 2.3 days in the UK and 3.3 days in Germany. 3/12
Read 12 tweets
13 Dec
It seems that the common assumption has been that Omicron will displace Delta, just as Delta displaced Alpha, Beta, Gamma, etc... before it. This may well be the case, but it's by no means definite. 1/15
Depending on Omicron's mix of intrinsic transmissibility and immune escape (and what happens with continued evolution), we could see:
1. Displacement of Delta by Omicron
2. Long-term co-circulation
3. Omicron wave followed by resurgence of Delta and extinction of Omicron
2/15
Intuitively, the more immune escape Omicron has from Delta-specific immunity the more the two variants have distinct ecological niches and so are able to co-exist without stepping on each other's toes. 3/15
Read 15 tweets
11 Dec
There is now enough genomic data from the US and Germany to repeat this approach to estimating Omicron-specific rate of epidemic spread. Here, we observe similar initial rapid spread in the US and Germany. 1/10
As before, we partition case counts from @OurWorldInData using sequences from @GISAID into estimated Omicron, Delta and other cases, and we use this partitioning to infer variant-specific Rt and epidemic growth rate r (methods and code here github.com/blab/rt-from-f…). 2/10
We find that logistic growth of Omicron sequence fraction looks similar between the UK, the US and Germany with roughly 1% of sequenced cases in all three countries being Omicron on Dec 1. 3/10 Image
Read 10 tweets
10 Dec
We've seen exceptionally rapid spread of Omicron in South Africa. Although we should expect this rapid spread to follow in other geographies, we've mostly lacked data to confirm this until recently. 1/21
Because of significant travel connections () and extremely strong genomic surveillance by @CovidGenomicsUK, we should have early data from the UK about rate of spread outside of South Africa. 2/21
The UK is sequencing between 5000 and 8000 viruses everyday. Although turnaround times are fast, necessary processing delays permit a view that's basically lagged by ~7 days. Today, I have a strong view of Dec 1 data in @GISAID, but Dec 2 has much less data available to me. 3/21
Read 21 tweets
4 Dec
As the Omicron epidemic continues to expand in South Africa and as case counts and sequencing data continues to come in, we can better estimate the current transmission rate of Omicron. 1/19
Here, I am focused on two approaches to estimate this transmission rate. One is growth in frequency of Omicron compared to Delta in Gauteng and the other is growth in case counts attributable to Omicron. 2/19
If one variant is fitter than anther variant and is transmitting faster in the population we should expect to see it increase in frequency following logistic growth. See @TWenseleers for discussion of this approach. 3/19
Read 19 tweets
2 Dec
I'm re-upping an analogy from Feb 2020 for how to think about epidemic spatial spread as Omicron is detected across the world. 1/6
Omicron appears to have emerged around Oct 1 and has taken 8 weeks of exponential growth to "suddenly" have sizable impacts on case counts and hospitalizations in Gauteng. This "suddenly" is the nature of exponential growth. 2/6
Exports from the South African epidemic are now being detected across the world and these exports are sparking local transmission. Figure from nextstrain.org/groups/blab/nc… using data generously shared to @GISAID. 3/6
Read 6 tweets

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