Some quick thoughts about the important new paper out of South Africa looking at Omicron severity medrxiv.org/content/10.110…
1) Study finds that controlling for time period, Omicron cases markedly less likely to be hospitalised
To me this is two things:
• "The @nataliexdean point": Omi’s immune evasion means lots of mild cases in people w/ good protection against severe disease
2) Controlling for time period, Omi *hospitalisations* roughly as likely as Delta hosp to become severe
To me, this is showing that once in hospital, that’s a good sign your main immune defences have been breached, so at this point Omi and Delta broadly same in terms of outcome
3) Study finds that when *not* controlling for time period, in-hosp outcomes for Omi are better than they were for earlier Delta wave.
To me, this shows the average Delta wave case had v little immunity, so outcomes back then were worse than now, when most are recovered or vaxxed
As authors say, very difficult if not impossible at this stage to disentangle immunity-driven effects from Omi-driven effects.
If my three points are fair, it means:
• All countries could see drop in case-hospitalisation-rate because they will all have the same dynamic of Omicron being relatively more likely than Delta to infect vaxxed/recovered people, who have good protection against severe disease
• But once people *are* in hospital being treated for Covid, whether Omicron or Delta this is serious, so those for-Covid hospital numbers will be as serious an indicator now as they have ever been
Thoughts? Comments? Questions?
Also we’ll be discussing all of this and more in our weekly Twitter Spaces session tomorrow at 2pm GMT / 9am Eastern
NEW: situation update from Gauteng, where cases, test-positivity and admissions are all now falling (no, this is not driven by testing capacity/behaviour or by migration).
Deaths and excess deaths still rising, but based on timing of peak will not come close to Delta levels.
Another way of looking at same data:
Cases climbed to 90% of their Delta peak, but admissions peaked at 50% and deaths will peak below 50%, demonstrating how immunity — both acquired since Delta, and differentially present among Omicron cases — reduces rates of severe disease.
As ever, a big thanks to the brilliant people at @nicd_sa who make this data available, and to the likes of @lrossouw and @tomtom_m who have consistently been providing invaluable data and commentary from South Africa.
NEW: weekly breakdown of hospital patients being treated *for* Covid vs those *with* Covid as an incidental finding is out.
Here’s London:
Though incidentals are still rising at unprecedented rates, there is also a clear and steep rise in patients being treated for severe Covid
Comparing the current rise to the Delta wave side-by-side, we can see that although there are far more "with, not for Covid" incidentals this time around, the number of patients being treated for Covid is rising faster than it did in the summer
But the summer Delta wave never came close to overwhelming the NHS, so key question is how this stacks up vs last winter
Numbers still well below last Christmas, and recent uptick is clearest on a log scale. Long way to go to approach Alpha wave, but direction of travel is clear
Top-line: share of Omicron cases requiring hospital is lower than for Delta
Critical first caveat: this is *not* comparing Omicron now to Delta waves months ago.
This is comparing Omi vs Delta in the same populations, at the same time.
So we’re not just saying "Omicron appears less severe because loads of people got vaxxed/infected in recent months".
So, what do the studies show?
In all four countries, the share of Omicron cases that require hospitalisation is lower than the share of Delta cases, after adjusting for age, sex, underlying health conditions etc (but not adjusting for vax/infection: more on this in a sec)
A Sunday thread highlighting just a tiny sample of the brilliant women whose tireless work has shaped my understanding of Covid-19
To kick off, who else but @chrischirp — staggeringly clear, accessible science communication throughout the pandemic, sharing critical data and charts virtually round the clock! Half the time I'm scrambling to catch up with my own work
@nataliexdean — creator of some of the most powerful, accessible visual communication on Covid that I've seen, certainly far more effective than anything of mine! Just consistently outstanding
NEW: here’s a chart showing daily cases by specimen date in London, broken down by variant.
This is what is coming to ~every country across the world in the coming weeks.
Let’s go deeper:
First, how are cases suddenly shooting up this fast?
Simple: just as we saw with Alpha and Delta, we’re now seeing two epidemics alongside one another. The recent steady rise of Delta masked the take-off of Omicron beneath. There’s no masking it any more.
How about the rest of the UK?
Same story, just a few days behind London (the hot new thing always comes to London first).
Record-high UK-wide reported cases today, and that will rise *a lot* in the coming days.
I think we may need to recalibrate our idea of typical case numbers as Omicron takes off.
Here’s what UK cases could look like *in the next week or two alone* if Omicron continues to double every 3 days (some actually estimate faster growth)