NEW: weekly breakdown of hospital patients being treated *for* Covid vs those *with* Covid as an incidental finding is out.

Here’s London:

Though incidentals are still rising at unprecedented rates, there is also a clear and steep rise in patients being treated for severe Covid
Comparing the current rise to the Delta wave side-by-side, we can see that although there are far more "with, not for Covid" incidentals this time around, the number of patients being treated for Covid is rising faster than it did in the summer
But the summer Delta wave never came close to overwhelming the NHS, so key question is how this stacks up vs last winter

Numbers still well below last Christmas, and recent uptick is clearest on a log scale. Long way to go to approach Alpha wave, but direction of travel is clear
Here’s another way of looking at it:

The total number of Covid-positive patients does slightly overstate the severity of the current wave as far as hospitals go, but the "for Covid" line is still clearly bending upwards
We’ll have more on the hospital situation later today
All in all, I’d say this is a decent illustration of what people have meant by "a small percentage of a large number can still be a large number".

We’re still way off last winter, but numbers with severe disease are growing, and not especially slowly.
("for vs with" data only starts in Jun 2021, so for Alpha wave I’m assuming fixed proportion of patients were being treated primarily for Covid, and that it was in line with the share seen over autumn. This could be wrong, but is unlikely to change the overall picture shown here)
Another bit of context here for considering the Omicron hospital situation over winter:

Hospital staff absences due to Covid have risen very steeply over the last week in London.

(no historical data to compare this with, to my knowledge)
An important addition here from @VictimOfMaths [and the brilliant Dan Howdon, formerly of Twitter]:

These figures undercount the total number or "with Covid" incidentals. Doesn't change the overall message but adds important context

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More from @jburnmurdoch

23 Dec
NEW: situation update from Gauteng, where cases, test-positivity and admissions are all now falling (no, this is not driven by testing capacity/behaviour or by migration).

Deaths and excess deaths still rising, but based on timing of peak will not come close to Delta levels.
Another way of looking at same data:

Cases climbed to 90% of their Delta peak, but admissions peaked at 50% and deaths will peak below 50%, demonstrating how immunity — both acquired since Delta, and differentially present among Omicron cases — reduces rates of severe disease.
As ever, a big thanks to the brilliant people at @nicd_sa who make this data available, and to the likes of @lrossouw and @tomtom_m who have consistently been providing invaluable data and commentary from South Africa.
Read 4 tweets
22 Dec
Thread summarising all of today’s Omicron severity data:

Story from me, @mroliverbarnes and @rmilneNordic, running through new data from South Africa, Denmark, England & Scotland ft.com/content/19065f…

Top-line: share of Omicron cases requiring hospital is lower than for Delta
Critical first caveat: this is *not* comparing Omicron now to Delta waves months ago.

This is comparing Omi vs Delta in the same populations, at the same time.

So we’re not just saying "Omicron appears less severe because loads of people got vaxxed/infected in recent months".
So, what do the studies show?

In all four countries, the share of Omicron cases that require hospitalisation is lower than the share of Delta cases, after adjusting for age, sex, underlying health conditions etc (but not adjusting for vax/infection: more on this in a sec)
Read 20 tweets
21 Dec
Some quick thoughts about the important new paper out of South Africa looking at Omicron severity medrxiv.org/content/10.110…
1) Study finds that controlling for time period, Omicron cases markedly less likely to be hospitalised
To me this is two things:
• "The @nataliexdean point": Omi’s immune evasion means lots of mild cases in people w/ good protection against severe disease
• And there may also be some innate reduction in severity at work here (but we don’t know yet)
Read 9 tweets
19 Dec
For no particular reason ...

A Sunday thread highlighting just a tiny sample of the brilliant women whose tireless work has shaped my understanding of Covid-19
To kick off, who else but @chrischirp — staggeringly clear, accessible science communication throughout the pandemic, sharing critical data and charts virtually round the clock! Half the time I'm scrambling to catch up with my own work
@nataliexdean — creator of some of the most powerful, accessible visual communication on Covid that I've seen, certainly far more effective than anything of mine! Just consistently outstanding
Read 23 tweets
15 Dec
NEW: here’s a chart showing daily cases by specimen date in London, broken down by variant.

This is what is coming to ~every country across the world in the coming weeks.
Let’s go deeper:

First, how are cases suddenly shooting up this fast?

Simple: just as we saw with Alpha and Delta, we’re now seeing two epidemics alongside one another. The recent steady rise of Delta masked the take-off of Omicron beneath. There’s no masking it any more.
How about the rest of the UK?

Same story, just a few days behind London (the hot new thing always comes to London first).

Record-high UK-wide reported cases today, and that will rise *a lot* in the coming days.
Read 23 tweets
10 Dec
I think we may need to recalibrate our idea of typical case numbers as Omicron takes off.

Here’s what UK cases could look like *in the next week or two alone* if Omicron continues to double every 3 days (some actually estimate faster growth)

Story: ft.com/content/2b309e…
When cases start surging, it will be more important than ever to use the right data to track the extent of severe disease.

I’ll be using this chart: the total number of people in critical-care beds *for any reason, not just Covid*.

It’s excess deaths, but for hospital pressure.
(you may recognise that from this animated version last year, which comprehensively debunked the myth that "hOsPiTaLs ArE aLwAyS fUlL aT wInTeR")
Read 6 tweets

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