The massive amount of positive attention that our article has been getting has forced me to reflect a bit on the process of getting this thing published
This has by far been the hardest paper to get published in my career to date
Soon after, we submitted (a much shorter version of) this paper to Nature as a Comment - after a month and a half, the paper was desk rejected
Following that rejection, we submitted the same manuscript to Nature Climate Change, PNAS, Ecology Letters, Current Biology, & eLife - all taking 4-8 weeks to desk reject
Not broad enough
Six 1+ month desk rejections. Oof!
That's when we decided to give @PLOSBiology a try & oh baby what a great choice that was
The #peerreview process with this journal was sheer brilliance & there are a few things I really want to commend the journal on in handling our manuscript
1. Reviews & editorial decisions:
Initial reviews took abt 2 mos. Editor had secured 4 reviewers: 2 marine ecologists + 2 meta-analysts
Initial reviews = MASSIVE revisions
But reviews were thorough, salient, & manageable
Editor was open to a revision
2. Editorial patience:
The volume & content of the revisions was immense: rewriting, data collection, re-analysis - our response document was 33 single-spaced pages!
As you can imagine, a lot of time & work
It took almost a year to revise but editor was patient + understanding
3. Speed:
After resubmitting such a huge revision, we had additional reviewer comments back in under a month
Nothing major & only minor comments to address
Two other rounds of editorial revisions & our paper was finally accepted, just over a year after submitting
4. Promotion:
The journal's staff saw road value in our work & we worked closely with them to produce a press release & broadly promote our paper
The press contact was super helpful & the journal deserves a lot of credit for this aspect of our paper
5. Embracing controversy:
We didn't want to put a focus on particular authors as a source of the decline effect - we wanted to keep it to the science
But the editors encouraged & asked us for such an analysis knowing very well what it would entail
Big kudos for embracing that
In short I really want to thank the editors of our paper (@RoliRoberts, A. Tanentzap) for seeing value in our work when other journals didn't
Their patience, interest & editorial prowess made the paper considerably better than the original MS & provided for a broad appealing pub
SO if you have an exciting paper & are wondering where to publish it, I would definitely recommend considering @PLOSBiology!
and if you're interested in learning more about the #peerreview of this paper, @PLOSbiology makes the full review process transparent - you can download and read the reviews and responses for our paper here: journals.plos.org/plosbiology/ar…
Finally, I want to give a shout out to @ASanchez_Tojar 7 @DanielWANoble for providing their analytical expertise at the drop of a hat - computing & analyzing effect size magnitudes (i.e., unsigned effect sizes) are much more complex than I originally thought!
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The paper is much different than the original preprint, so here’s a thread:
Some of the most drastic & ecologically worrisome impacts of #oceanacidification are reported for fish behaviour. Initial studies from 2009-2010 documented 100% impairment of anti-predator behaviour for fish exposed to ocean acidification conditions!
In a suite of experiments comparing #oysters treated w/ antibiotics vs. not, we demonstrate that bacteria endogenous to oysters accelerate mortality rates
The 3-year project was triggered by mass mortality of cultured oysters in 2016, seemingly linked to a period of low O₂
Generally, we found that oysters treated w/ antibiotics (chloramphenicol) lived approx. twice as long as those not treated with antibiotics
Oyster density appeared to have no effect on mortality rates under anoxia
We demonstrate one of the most striking examples of the #DeclineEffect in #ecology to date, w/ reported effects of OA on fish behaviour all but disappearing over past decade