Bill Hanage Profile picture
Feb 16 13 tweets 4 min read
Vaccines that protect against severe illness and death have been available for more than a year. In this we estimate conservatively that in the US ~135,000 lost their lives to covid over the Delta wave for lack of vaccination medrxiv.org/content/10.110… 1/n
Because vaccines were not immediately available to all we only look at 5/30/21 to 12/4/21, after which omicron rapidly took over and the situation changed (again). By the start of that time even I (youngish, not in a priority group) was vaccinated 2/n
All this makes use of data from covid.cdc.gov/covid-data-tra… vaccine-status. Please read the preprint for full details, but a few major points follow 3/n
First the vaccination rate did increase among the 18s and over during this period, though not by a lot 4/n
This however, shows the difference in the deaths over this period between those vaccinated and unvaccinated. If you think that is grim, I agree with you 5/n
We then multiplied the mortality rate difference to the total number of unvaccinated individuals in the 26 jurisdictions by age group and week, to estimate the number of excess deaths 6/n
Note this accounts for age, and for the proportion of each age group vaccinated by week. The data are from only 26 US jurisdictions in which we estimated a total of 83,400 excess deaths from lack of vaccination. But we can extrapolate to the rest of the country 7/n
While covid is more serious in older populations, it is not trivial in younger age groups. Estimate 31.1% of these deaths occurred in 50-65 yr olds, 13.9% in the 30-49 age group. You can do the math 8/n
Or alternatively... here's the math done for you 9/n
The full preprint contains various sensitivity analyses on, for instance, the impact of partial vaccination. But the headline conclusion that under vaccination has led to an enormous number of deaths, including in younger age groups, remains 10/n
Notably over this period many parts of the US had already withdrawn mitigations we are now hearing about being relaxed in Europe. Which meant among other things plenty of virus around to prey on the unvaccinated 11/n
and, as I type, 'mild' omicron continues to cause large amounts of death. This should start to decline soon, but the losses will be fewer if we can vaccinate more and boost the vulnerable 12/n
Finally thanks to excellent co authors including the @mlipsitch @DavidSwerdlowMD and Katherine Jia for leading this. As well as the folks at @CDCgov who collect the data and make it available 13/end

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More from @BillHanage

Feb 4
I’ve been thinking the last few days how it’s hard for non-specialists, watching a twitter spat between apparent experts, to know who to believe. Here are a few things I bear in mind when following people outside my own field. A far from exhaustive list 1/n
The person who posts the most is not necessarily the one with the most or the best evidence. They may simply be the person with the most time. Once I'm done with this I will be making my kids dinner and spending time with them, so don't expect me to notice twitter😊 2/n
The person with the fancier credentials is not always right. Nor is it the case that every loud voice with narrow experience is bravely telling truth to power 3/n
Read 10 tweets
Jan 26
This is a completely reasonable request about what recent UK (and other) data means for the pandemic, and in particular BA.1 and BA.2 (let alone BA.3 which, yes, is a thing). Here goes 1/n
BA.1 and BA.2 (leaving 3 aside for this) are *both* omicron. They are deep branching cousins within the lineage, separating almost a year ago (phylogenetic types don't at me, this is in general terms) 2/n
Now they can be distinguished using this neat property of one of the diagnostic tests. BA.1 has a mutation which means some tests produce a weird characteristic result called Spike Gene Target Failure or SGTF. Most other circulating viruses (including Delta and BA.2) don't 3/n
Read 12 tweets
Jan 15
Despite the very sharp drop in wastewater numbers in the Boston area, daily covid deaths are ticking up towards last winter's peak. What can we learn from elsewhere? Well let's compare with the UK, which is a little further along the epidemic curve 1/n
I pick the UK not only because it's where I was born, but because the population is about 10x that of MA, meaning it's easy to do the math in your head, look at this 2/n
So per capita, MA is seeing roughly twice as many daily covid deaths as the UK right now. Lots of possible reasons for that, but this one is important. About 36% of the population in MA is boosted (from mass.gov/doc/daily-covi…) 3/n
Read 5 tweets
Jan 11
What did I say last Friday about the Boston area peaking? The wastewater data are in, and the news is good. @MWRA_update and @BiobotAnalytics providing solid evidence, that importantly *can't* be put down to exhausted testing capacity or other factors 1/n
this is obviously good, but it's not out of the woods good. Many of these infections were in younger age groups. We are now starting to see more infections in older folks, who are more likely to require hospital care 2/n
this would be expected to lead to fewer but more consequential infections in terms of healthcare, and a curve there closer to a plateau. They might drop more quickly than that, and they did in S Africa, but there are more older people here (albeit they are more boosted) 3/n
Read 6 tweets
Jan 8
Why are we not all chilled given vaccines work against severe illness even with omicron? Well in the US (and pretty much anywhere) we are yet to see infections of large numbers of older people, and healthcare is already stretched. Here goes 1/n
This makes the point at least as well as I could
2/n
Right now close to 10% of folks in my neighborhood are infected. What this means is both good and bad 3/n
Read 10 tweets
Jan 7
So a brief thread on the state of the pandemic in the Boston area. It is quite plausible that about 10% of the population is currently infected, more in some age groups than others. A *lot* of omicron. What next? 1/n
First that 10% figure. Earlier this week, the local school district tried pooled testing before reopening after the holidays. It didn't go well as 157/362 pools came back positive, that's consistent with about 5% of the population being positive 2/n
(we don't know exactly, because the individual swabs never got tested. But some pools will have had >1 positive swab by chance, so it is probably more than 5% although way short of some of the numbers in the email parents received. Not great communication there) 3/n
Read 16 tweets

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