THREAD on all the reasons why I think Omicron does *not* signal the end of the pandemic

TLDR: vaccines & mitigations can hasten its end but we're not done yet & Omicron is just another milepost on the road.

So here goes: Omicron is the 4th major variant to dominate here 1/10
But variants aren't single blocks either - Delta in the UK ended up being mostly subtype AY.4 and AY.4.2 was taking over when Omicron came - and now BA.2 is taking over from BA.1.1. which took over from BA.1. 2/10
Covid evolves rapidly, but this isn't straightforward.

None of the main variants evolved *from* each other - instead so far they are all distinct, becoming gradually fitter via subvariants until replaced by an entirely new variant. 3/10

H/T
The further away a variant is from wild type, the lower vaccine protection against infection.

The further away a variant is from that which previously infected you, the more likely you are to be reinfected. 4/10
It is also not true that variants are becoming milder.

Delta was *more severe* than Alpha which was *more severe* than original covid.

Omicron *is* milder than Delta but likely not milder than original covid... and it's not part of a steady progression to mildness. 5/10
Because almost all Covid transmission happens while people have no or few symptoms, there is no particular reason for severity to play a role in evolutionary selection.

NERVTAG thinks Omicron's mildness likely pure chance & next one is likely to be more severe again. 6/10
Meanwhile, vaccines are really good but even booster shots have waning efficacy against Omicron and further vaccine doses likely have diminishing returns.

Esp as covid evolves further away from wild type which current vaccines are based on. 7/10
It's also too soon to say Covid is endemic. Endemic means that the disease is in some ways stable or predictable (but not nec mild!)

World has just seen steepest ever exponential surge. Who predicted this in November?

Covid may well become endemic but it's not there yet. 8/10
We just *don't know* how coronaviruses evolve in the long term in humans, or over what timescales.

We also don't know what will happen over coming years as the virus jumps into animals and back into humans again. 9/10
Finally, we've called pandemic over after *every* wave.

Omicron is just the latest wave for which we are doing this.

No particular reason to think it's true this time (tho' we *are* closer to end).

We *can* hasten pandemic end through vax + public health mitigations. 10/10

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More from @chrischirp

Feb 11
THREAD: quick overview of where we are with Covid in UK - and end of a dashboard era...

TLDR: going to move to using ONS infection survey only from now on, cases still high, trend uncertain, hospitalisations and deaths falling 1/12
firstly, vaccination isn't really happening - very low numbers of 1st, 2nd or 3rd vaccinations now 2/12
PCR tests are dropping like a stone - and this is what we used to calculate to positivity rates. So they are becoming more unreliable. And then, different nations are now changing how they are reporting nations and Scotland is stopping positivity reporting. 3/12
Read 12 tweets
Feb 10
THREAD: I keep being asked when we can go "back to normal" or "like it was before". My personal thoughts:

We've added a new disease to our population, more infectious and more severe than flu.

The world pre 2020 no longer exists - we may want it to, but it just doesn't. 1/13
Vaccines are amazing but do wane - esp vs sympomatic infection. Immunity from infection wanes too.

Surely Omicron has proven that high levels of antibodies in your population are no guarantee against v high levels of illness & disruption. 2/13
We *could* act as we used to & accept millions of people getting sick once or twice a year. Yearly education, business disruption. And gradually, a slightly sicker pop'n. That seems to be the current plan in UK and e.g. US.

But that's NOT the *old normal* - it's worse 3/13
Read 13 tweets
Feb 4
THREAD - STATE OF COVID IN UK

Quite long but hopefully comprehensive thread on where we are...

TLDR: cases increasingly hard to interpret, hosp & deaths declining, schools big issue, new (but not more severe) subvariant growing 1/18
Vax - vaccinations have dropped off a cliff in 2022. 80K a day vs almost 1 million before Xmas.

And it's not cos we've finished! Esp NI has only 50% of pop boosted.

We need to keep trying to increase uptake - messaging that pandemic is over and omicron mild doesn't help. 2/18
PCR tests have dropped off massively too since we've stopped requiring confirmatory tests for LFDs. *Reported* use of LFDs is also dropping.

Some is less infection, but not all. Will make both reported cases & positivity rate (based on PCR) hard to interpret. 3/18
Read 19 tweets
Jan 24
So, we're back - as predicted in mid Dec (!) - in two epidemics - a growing one in children (& flat in their parents' generation) and declining in everyone else.

Unvaxxed children in schools have highest and fastest growing rates - ie 5-9 yr olds. Cases >2x higher than Dec. 1/5
And equally, while hospital admissions fall in adults, they are higher than ever and rising in children.

While most admissions are short and children recovering quickly, they are still sick enough to come to hospital.

We don't know about Omicron & PMS-TS, Long Covid etc 2/5
Most other high income countries are far ahead of us in vaccinating teens and 5-11 year olds.

We know the vaccines are safe and protect against severe illness. SAGE reported that recent teen Covid admissions to ICU were all unvaccinated. 3/5
Read 6 tweets
Jan 18
THREAD: Quick UK Covid update...

I didn't get chance to do thread after Friday @IndependentSage briefing (viewable here: )

so here is a quick update.
TLDR: cases and admissions have likely peaked, but expect schools to prolong the wave... 1/10
Reported cases have peaked and in all nations.

While many things affect case reporting, positivity rates are also falling (good). ONS always lags by a week or two, but hopefully we will see sustained drops in a week or two.

BUT prevalence is still *extraordinarily* high. 2/10
Cases are now falling in all English regions - you can see a clear pre-Xmas change in London likely driven by people cancelling plans to avoid being sick at Xmas.
NE last to peak, but it has.

Again ONS is a bit lagged, but shows London has and other regions flattening 3/10
Read 10 tweets
Jan 12
Short thread on kids, Omicron, hospitalisations:

The US is seeing record hospitalisations among children with Covid.
cbsnews.com/live/video/202…

New York has released a *very preliminary* analysis of admissions since Omicron 1/4
health.ny.gov/press/releases…
First they find that the largest *increase* in Covid admissions by age was in children, particularly under 12s and under 5s. This was both in admissions *for* and admissions *with* - about 60% were directly for Covid.

About half had no pre-existing health conditions. 2/4
They do a very preliminary comparison between Omicron and Delta (unvaccinated patients only) and find that while Omicron seems to be causing fewer hospitalisations in *adults*, the opposite is true in *children*.
Again this is preliminary but needs to be looked into further. 3/4
Read 4 tweets

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