2/ The study in question is a mouse study, as you can really perform these fine mechanistic study in animal models
Data show that genetics variation among mice was a minor contributor and the variations in microbiome composition were more important for physical performance...
3/ To show the microbiome mediates the effects, they knocked out the microbiome with antibiotics in high-performer mice and the result was an impairment physical performance by 50%! (2a)
By contrast, microbiome transplant could enhance performance.
4/ Progressed to test hypothesis that motivation to exercise accounted for effect of microbiome on physical performance
Found that exercise ⬆️ dopamine levels (controls motivational state) AND exercise-induced ⬆️ in DA could be blunted w/ antibiotics to destroy microbiome
5/ Figure shows DA levels are NOT impacted in the basal state w/ antibiotic treatment but that antibiotics do prevent the rise in DA following exercise – consistent with the possibility that microbiome dysfunctioncould impact motivational states related to exercise @hubermanlab
6/ Zooming fwd so as not to get tedious, by blocking elements of pathways or activating elements, the team demonstrated there is an axis whereby certain bugs produce metabolites that activate neurons that signal to DA motivational centers in the brain to want to exercise
7/ Specifically, the most potent gut derived metabolites were fatty acid amines, such as N-oleoylethanolamide (OEA) (5e), which – for the super nerds out there – is a lipid that acts on the endocannabinoid pathway and is structured based on oleic acid, a monounsaturated fat
8/ The scientists were even able to show that gastric infusions of (OEA) recapitulated the effects of dopamine increase and improved exercise motivation/performance, and that more OEA correlated with more running (5g)
9/ These data spell out a story showing a strong link between the microbiome and exercise motivation
By better understanding these pathways, we could create dietary protocols or probiotics that could make us want to move our bodies more, improving personal and public health
10/ Plug again for 5 min video overview & Happy Saturday!
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🚨How Chronic Stress Causes Depression🧠
(Link to Letter 🔗 at the end)
1/8) A new paper about the neuroscience of depression is the most fascinating mental health papers I’ve read in 2025!
It reveals a possible central biological mechanism by which chronic stress can contribute to depression and opens doors to innovative solutions for improving mental health. (link at the end)
Let’s get into it…
#depression #mentalhealthmatters #autophagy
cc/of interest @janellison @ChrisPalmerMD @NTFabiano @KetoCounselor @TuitNutrition @hubermanlab @AllyTransforms @bschermd @Metabolic_Mind
2/8) Background to Know: Lateral Habenula 🌶️ & Autophagy♻️
The habenula is a region in the middle of the brain important in processing
aversive and unpleasant stimuli and in the stress response.
🌶️Because I love memory tricks, the way I remember this is: habenula sounds like habanero, the spicy pepper that can be 100x hotter than a jalapeño — and is therefore an aversive and unpleasant stimulus for most people. So now you won’t forget it! Specifically, the lateral habenula is important in processing responses to unpleasant stimuli and stress.
♻️Think of autophagy as your brain’s janitor crew. It’s a built-in cleanup and recycling system within cells. When proteins get old or broken, a membrane wraps around them like a trash bag, isolating the waste from the rest of the cell. That bag — called an autophagosome — then fuses with the cell’s digestive center and breaks the waste down into reusable parts.
But here’s the catch: under chronic stress, it’s like the janitors go on strike. The trash piles up, the system clogs, and neurons start to malfunction. That’s where things start to go wrong — and potentially spiral toward depression.
And that’s what they show in this paper — at a high level — autophagy within the lateral habenula is impaired, contributing to depression.
3/8) Chronic Stress Inhibits Autophagy in the Lateral Habenula
First, it’s important to note that there are already data suggesting autophagy markers are impaired in people with mental health disorders, including depression.
To demonstrate a causal relationship, the researchers subjected mice to various chronic stress protocols designed to model depression. This decreased autophagy, specifically in the lateral habenula.
You can see that here (Figure 1G): the result of an experiment where they exposed mice to acute or chronic stress and measured levels of a protein called p62, which is normally broken down by autophagy.
👉Taller bars = less autophagy👈
And you can see taller bars in the chronic stress condition — meaning autophagy is inhibited by chronic stress.
🚨 New Genetic Discovery: Why Some People Naturally Eat Less Sugar & Stay Lean 🍫➡️🚫 (link at the end)
Scientists may have just uncovered a hidden biological quirk that makes some people naturally eat less sugar, crave less sugar, and stay lean.
1/5) A paper just published in Gastroenterology found that people with mutations in a gene coding for a carbohydrate-digesting protein called “sucrase-isomaltase” had:
✅Lower intake of added sugar
✅Lower BMI
✅Improved metabolic health
But here’s the kicker: there may be a way to hack this system, even if you weren’t born with these lucky genetics 👀…
2/5) Researchers found that people with a Sucrase-isomaltase mutation that reduces this protein’s function not only consumed less sugar but also experienced better metabolic health overall.
🍭 Voluntarily ate less sugar
🥤 Drank less sugary fluids
🔁 AND released more GLP-1 in response to sugar
3/5) The whole metabolic cascade isn’t fully understood yet, but another key player might be acetate, a molecule that increased in both the mice and humans with this mutation.
Researchers suspect this acetate signals the brain and nervous system to boost GLP-1 levels and curb sugar cravings.
And here’s something else really fascinating part: the more sugar a food contained, the less people with this mutation liked it—compared to those without it!
'Lettuce' Be Honest: Fiber Isn’t Always the Answer🥬🤥(Refs linked in letter at the end) 🧵
1/6) We’ve been told for years that fiber is a must-have for gut health—that without it, your microbiome will crumble faster than a stale bran muffin.
But what if I told you… you don’t actually "need" fiber?
But before you throw your kale smoothie at the screen, let’s break down the science—because the truth about fiber is way more complex than a simple 'good' or 'bad.'
Some people argue that fiber-rich foods are anti-inflammatory. But that’s not entirely true.
For example, a landmark randomized controlled trial published in Cell found that some people were inflammatory responders to dietary fiber. Reading from the paper, “Taken together, these data suggest divergent immune system responses to the high-fiber intervention, with high-inflammation participants exhibiting broad increases in steady-state immune activation.”
To be clear, this was NOT the majority of participants.
And it's also worth noting that those with lower microbiome diversity tended to be the inflammatory responders, raising the 🤔hypothesis🤔 that there might be protocols by which one could train-up a microbiome such that it responds with a healthier anti-inflammatory response to fiber...
It’s possible.
But the fact remains that some people have a pro-inflammatory response to fiber that could have negative health consequences and contribute to or exacerbate chronic disease.
3/6) Fiber & Microbiome Diversity🥬🤔
One point that is often raised is that fiber depletion or elimination will decrease microbiome diversity, a presumed marker of good health. This is fair speculation at a population level. However, there are deeper nuances.
First, microbes in the gut can feed off more than just fiber and eating a low-fiber diet doesn’t necessarily lead to decreased diversity.
For example, in one impressively comprehensive case study, a man who had been on a carnivore diet for 4 years had his microbiome compared to that of omnivores and, reading from the study, “[T]he comparison showed surprising results. The carnivore’s gut microbiome did not stand out regarding α- and β-diversity, indicating that it did not lack richness or diversity when compared to its omnivore counterparts.”
And “Our study indicates that adherence to a carnivorous diet does not cause detrimental changes in the gut microbiome. Instead, it suggests that the effects on the gut microbiome are due to the combined influences of dietary regime and lifestyle, rather than meat consumption alone. Further research is needed to identify which components of the carnivore diet could act as prebiotics in the absence of plant-derived prebiotics and maintain gut health over time.”
Granted, this is a case study. But even an N = 1 it’s sufficient to make the point that even complete fiber elimination for 4 years doesn’t starve off the microbiome.
What if all *autoimmune diseases* were stemming from the same source, from a seed planted 2 Billion years ago that’s just beginning to flower? 🔥🤔🧵
1/6) That might sound wild—but it’s actually the central thesis of a perspectives paper published in @Nature, which proposes that many autoimmune diseases may be driven by the failure of a relationship that began 2 billion years ago: the one between your body and your mitochondria.
For me, this idea carries personal weight since I suffered from debilitating inflammatory bowel disease, which went into remission on a ketogenic diet.
I’ve seen others similarly put IBD, lupus, multiple sclerosis, and rheumatoid arthritis into remission with lifestyle change.
And I desperately want to know how it works.
But enough chit chat, the paper is entitled: “A break in mitochondrial endosymbiosis as a basis for inflammatory diseases.” (PMID: 38326590).
This thread will explain it in simple terms, but with nuance. 🧵👇
(link to more at the end)
Potentially of interest to:
@ChrisPalmerMD #BrainEnergy
@thegarybrecka @joerogan - Discussed Autoimmune Disease on Epi #2304. I agree with Gary, "God [metaphorically or literally speaking, depending on your beliefs], didn't make a mistake." And THIS might be what we are missing
@hubermanlab @R_Mohr @bryan_johnson because of relationship to circadian rhythms
@MitoPsychoBio because #mitochondria
@AdrianSotoMota @drmarkhyman @MatthewNehsMD @drericwestman @JEverettLearned @AKoutnik @lowcarbGP because I know they will
And Ht/ @davidludwigmd who passed me the paper that inspired this thread, newsletter & upcoming video
#autoimmunity #inflammation #mitochondria #metabolichealth #metabolism
2/6) What is "Mitochondrial Endosymbiosis?"
About 2 billion years ago, a cell consumed another, smaller bacteria-like cell (technically it was an Asgard archaeon). That second, smaller cell didn’t get digested and pooped out, but integrated into the larger one.
This is what’s meant by “endosymbiosis.”
And, you guessed it, that smaller cell was the precursor to our very own mitochondria, the engine and the powerhouse of most of the cells in your body and the center of your metabolism.
But your mitochondria are far more than just little engines.
They are also informational hubs and communication stations, signaling all over your body to cue and coordinate near infinite pathways and processes.
And how mitochondria do this derives, at least in part, from their foreign origins. Truly, mitochondria retain many of the signatures of their foreign origins that mark them much like bacteria or viruses and apart from other components of “you.”
The authors write, “we can also consider mitochondria as a pseudobacterium ‘bricked in’ behind the mitochondrial outer membrane.”
3/6) A Break in Endosymbiosis Triggers Autoimmunity
And your body’s immune system is great at recognizing the “other” – foreign invaders.
Mitochondria, for the most part, are shielded within cells and so don’t get targeted and attacked. However, the body can selectively release mitochondrial components or mitochondria-derived signaling molecules to trigger certain events.
In the authors’ words, “[T]he endosymbiotic origin of mitochondria marks them apart from the rest of the cell in a way that can be co-opted to produce key messages pertaining to cell fate.”
For example, in response to cell stress, mitochondria can release proteins from the intermembrane space, like cytochrome C, to trigger a form of organized cell death called apoptosis. Mitochondria also retain their very own mitochondrial DNA (mtDNA), separate from the DNA in your cells’ nuclei.
And the release of this DNA can also trigger immune reactions. In some cases, the inner portion of mitochondria can swell, and components can literally herniate out (illustrated below) of the mitochondria, pushing components including mtDNA, and triggering an immune/inflammatory reaction.
🫀Most participants showed NO OR MINIMAL or progression of coronary plaque
🫀Neither ApoB nor LDL exposure predicted plaque progression
🫀But plaque predicted plaque progression, leading to the conclusion and Title:
1/10) 🧵This thread will give you some high-level points, direct you to more information, and tell you how 🫵YOU🫵 can help change “the science”
Colleagues and I have spent the last several years studying what happens to cholesterol levels in people who adopt very low-carbohydrate ketogenic diets
🤔Most don’t see increases in cholesterol.
🤔Many even see decreases.
👉However, some see their LDL cholesterol (LDL-C) levels rise so high that most doctors think it’s “inconceivable.”
These special individuals are called ‘lean mass hyper-responders’ (LMHR) because they are, as a population, generally lean and healthy.
In fact, our prior meta-analysis of 41 human RCTs (PMID: 38237807) showed that the leaner a person is, the higher their LDL-C tends to rise on a low-carbohydrate diet trials.
🧈🧈🧈🧈This study also showed that having a BMI < 25 kg/m2 was >5X as powerful as being in the top quartile of saturated fat intake for predicting LDL-C change.
So, this is certainly far more interesting than a ‘blame-the-butter’ story …
3/10) We followed 100 LMHR and near- LMHR, having mean BMI 22.5 kg/m2 and mean LDL-C = 254 mg/dl, with high resolution coronary CT angiography.
We followed them to see whether, and to what degree, plaque accumulated in the arteries of these individuals with extremely high LDL-C.
Why do some people with crazy high LDL-C and ApoB develop no plaque in their arteries, while others – including those with far lower LDL and lower ApoB – do develop plaque? 🫀🤔(link 🔗 at the end) 🧵...
1/6) We know this is a phenomenon. So, let’s tackle one possible explanation centered around the following term: Transcytosis...
#LDL #ApoB #LMHR #LEM #Cholesterol #HeartHealth #CholesterolCode cc @realDaveFeldman @AdrianSotoMota
2/6) Transcytosis, Made Simple🫀🤔
Your arteries are lined by cells called endothelial cells. Endo- means within, as these cells are within the tube that composes your blood vessels. A coronary plaque grows when cholesterol-containing particles, including LDL particles, slip through the endothelial barrier and begin to seed a plaque.
But HOW do cholesterol-containing particles penetrate the endothelial barrier? It’s not like a healthy endothelial barrier is coarse chicken wire. It’s rather tightly knit.
That’s where “transcytosis” comes into the picture.
Transcytosis is the process whereby a cell – in this case, the endothelial cells lining your arteries – sucks up something from outside (here, an LDL particle containing cholesterol), passes that something through its interior, and then out the other side.
By way of analogy, think of your artery wall like an exclusive nightclub. Some particles get waved in VIP-style. Others get stuck outside. But what if LDL wasn’t just passively slipping through a hole in the wall, but was actually being escorted through by a bouncer? That is - more or less - transcytosis.
3/6) Your Coronary Epiphany! 🫀💡
Now, given this perspective, you may have just made a connection or had a coronary epiphany!
People often talk about the process of plaque development in a manner that suggests the more cholesterol-containing particles you have in the blood, the more that end up getting inside your artery wall and getting trapped there – in a rather linear fashion.
Let me be clear, this idea that more cholesterol containing particles in your blood automatically equals more flow of these particles into your artery walls (and more coronary artery disease) is a MASSIVE ASSUMPTION and likely incorrect, or at least incomplete.
Instead, transcytosis is an active, regulated process...