Ali Max Erturk Profile picture
CEO of @DeepPiction, director at Helmholtz, LMU Prof. AI-based technologies for health. We’re🇩🇪🇹🇷🇭🇷🇨🇳🇮🇹🇮🇳🇸🇮🇴🇲🇨🇱🇭🇺🇧🇬🇺🇦🇷🇴🇦🇹🇹🇼🏳‍🌈
Nov 29 20 tweets 7 min read
Our new study shows that SARS-CoV-2 spike protein accumulates & persists in the body for years after infection, especially in the skull-meninges-brain axis, potentially driving long COVID. mRNA vaccines help but cannot stop it🔬🧠🦠🧵👇@cellhostmicrobe cell.com/cell-host-micr… 2/n Summary: (Your weekend read:))
We found SARS-CoV-2 spike protein in the skull-meninges-brain axis in mouse models and human post-mortem tissues long after their COVID, which was associated with vascular, inflammatory changes in the brain along with neuronal damage. Image
Jul 17 7 tweets 3 min read
What if we could map every cell in the body, revealing its location and molecular identity? In this @NatureMethods perspective, we discuss the new era of 3D-omics by tissue clearing and AI, called Deep 3D Histology: PDF: 🧵👇🏼 rdcu.be/dNBe8
bit.ly/3WaD0QU
Image 2- Tissue clearing techniques are evolving to enable imaging of intact specimens at cellular resolution. Learn how these methods, combined with light-sheet microscopy, are pushing the boundaries of 3D imaging from mouse embryos to entire human organs. Image
Apr 22 21 tweets 6 min read
Very excited to share that our DELiVR method is now open access published @NatureMethods. We created a simple, brain-wide cell analysis deep learning tool, no coding needed! Fiji Plugin makes it accessible to all.
by @Dorie00 @Rami96614090 @moritz_negwer nature.com/articles/s4159…
2/n DELiVR is a robust deep-learning pipeline for whole-brain cell mapping. It operates through a user-friendly Fiji plugin. Re-trainable on custom data, DELiVR simplifies and streamlines brain cell analysis. Image
Aug 9, 2023 15 tweets 4 min read
Exciting🥳 Our new study in Cell shows that our skull is a gateway for diagnosing & potentially treating brain diseases such as Alzheimer's & stroke. Imagine a future where a portable sensor on the skull can monitor brain health! @CellCellPress 🧵👇🏼with🔈 https://t.co/VrzVSra4lKcell.com/cell/fulltext/…
2/n Background: Neuroinflammation, the brain's immune system reaction common in disorders like stroke and dementia, can be like a fire damaging a house. Controlling it is tough as the brain isn't easily accessible. Image
May 23, 2023 17 tweets 7 min read
Want to use deep learning for image analysis but lack the coding skills? We introduce DELiVR, a game-changer in brain-wide cell analysis. No coding required, our Fiji Plug-in does the magic. Hats off to @Dorie00, @Rami96614090, @moritz_negwer! 🧵👇🏼 1/n biorxiv.org/content/10.110… twitter.com/i/web/status/1… 2. What makes DELiVR stand out? It's a robust deep-learning pipeline for mapping cFos+ cells in whole brains. Combining tissue clearing, light-sheet microscopy, VR annotation & deep learning, it comes in an easy-to-use FIJI plugin and docker container! biorxiv.org/content/10.110… Image
Apr 6, 2023 8 tweets 3 min read
4/n Finding 1)
Along with many organs, we discovered spike accumulations in the skull marrow niches and recently discovered skull-meninges connections (SMCs), revealing a new route of pathogens into the brain. Image 5/n Finding 2)
Critically, we found the spike protein also in the skull bone marrow niches, and meninges of people who died from COVID-19. Image
Apr 6, 2023 4 tweets 3 min read
😮~60% of us who had COVID still might have lingering viral spikes in our heads! Our new study reveals SARS-CoV-2 spike accumulation in the skull-meninges-brain axis & its implications in long COVID. By @zhouyi_rong @HongchengM @Sakethkapoor🔬🧠🦠🧵👇 biorxiv.org/content/10.110… 2/n Summary:
We found SARS-CoV-2 spike protein in the skull-meninges-brain axis in mouse models and human post-mortem tissues long after their COVID, which was associated with vascular and inflammatory changes in the brain along with neuronal damage. Image
Feb 20, 2023 14 tweets 8 min read
Imagine you could stain whole adult mice with standard IgG antibodies. What you couldn't do! We present wildDISCO technology for this🤗, creating the first whole body vascular, lymphatic, and nerve atlases. By @HongchengM @jieluo692 biorxiv.org/content/10.110… 🧵👇🏼(turn on the sound) 2/n Summary:
wildDISCO is a new tissue chemistry enabling uniform staining of whole bodies with conventional (150 kDa size) IgG antibodies. It reveals the first whole mouse body cellular & structural maps similar to Allen Brain Atlas only that main them at the whole mouse level. Image
Dec 22, 2022 16 tweets 12 min read
Spatial-omics goes 3D🤗! Out at Cell @CellCellPress 👉🏼 We developed DISCO-MS with @labs_mann, a spatial proteomics technology for specimens fully imaged in 3D. DISCO-MS is aided by robotics and enables the study of diseases at their early stages. cell.com/cell/fulltext/…🧵👇 Summary:
DISCO-MS is a spatial proteomics technology: it enables proteomics analysis of cleared tissues imaged in 3D. DISCO-MS is aided by AI and robotics and yields proteome similar to fresh or fixed samples.
Have questions? Add them below👇 we will answer📖
Feb 13, 2020 13 tweets 7 min read
We are very excited to share our SHANEL method making the intact human organs transparent, just published at Cell. cell.com/cell/fulltext/… by @shan_heather et al.
See short tweetorial for details:
#clearing #imaging #3D #deeplearning #AI @CellCellPress Mapping the human brain or other organs is a crucial step forward deciphering how they function in health and disease.
Dec 31, 2018 12 tweets 6 min read
I am excited to share our publication of vDISCO technology: a whole mouse body clearing & imaging method nature.com/articles/s4159…. The thread below presents details of vDISCO and its biological findings. @NatureNeuro @nature. Happy New Year all! 1/12 2 years ago, we published uDISCO to clear and image intact adult mouse body with light-sheet microscopy. However, neuronal details were mostly invisible through intact bones, skin and highly autofluorescent muscles. nature.com/articles/nmeth…. 2/12