Thread by @lcolladotor

Congrats Nick github.com/Nick-Eagles for your @biorxivpreprint first pre-print! 🙌🏽

SPEAQeasy is our @nextflowio implementation of the #RNAseq processing pipeline that produces @Bioconductor-friendly #rstats objects that we use at @LieberInstitute

📜 biorxiv.org/content/10.110…

This project started a few years ago with Emily Burke linkedin.com/in/emilyeburke/ @BadoiPhan @andrewejaffe with whom we wrote a version specific to our HPC 🖥️ (JHPCE)

github.com/LieberInstitut…

Then @Jake_Aaron96 Israel Aguilar et al from @wintergenomics rewrote using it @nextflowio

Nick continued developing it with input from @sudo_BreeB and tests from colleagues

Nick also wrote the documentation website research.libd.org/SPEAQeasy/

Then @JoshStolz2 @lahuuki helped show the outputs can be analyzed with @Bioconductor

research.libd.org/SPEAQeasy-exam…

We've used these #RNAseq outputs extensively in previous projects with @andrewejaffe et al

Some examples:

doi.org/10.1016/j.neur…
doi.org/10.1038/s41467…

Now our colleagues can use it too without having to tweak all the processing steps ^^

Next up, Nick & @JoshStolz2 will teach a workshop on how to use it at #EuroBioc2020 next week

eurobioc2020.bioconductor.org/conference_sch…

research.libd.org/SPEAQeasyWorks…

I also bet that you'll see Nick's name around more frequently. He's just getting started ;)

The first paper is always the hardest 😤