A lot of problems in science come down to whether larger amounts of noisy data are better or worse than smaller amounts of high-precision data. Of course, in paleoanthropology we usually are faced with small amounts of noisy data.
Our problems are that paleoanthropologists make up for shortfalls in data by carting in models and assumptions. These take on a life of their own, so much that even new discoveries that provide high-precision data cannot make a dent in most people's research direction.
I'm reading very carefully today an article by @Keilmesser and Marlize Lombard, which presents a very conventional view that large-brained hominins must have made MSA toolkits and smaller-brained hominins could not have done so. It's a thoughtful paper, but I'm unpersuaded.
The paper is in the Journal of Archaeological Method and Theory, here: doi.org/10.1007/s10816… I would advocate a more critical examination of noisy data. For example, I don't think the data show whether or not H. naledi and H. sapiens (or other hominins) were sympatric.
The argument that larger brain size supplies the "cognitive requirements of lithic technology" depends implicitly on the assumption that tools come from domain-general cognitive mechanisms. We increasingly see in comparative and experimental psychology that this isn't true.
Stone age archaeology is long overdue for a re-evaluation of the concept of "association". Finding a bone within a geological stratum that also contains stones links them only with the temporal resolution of the stratum -- which may extend tens to hundreds of thousands of years.
This paper grapples with the problem of niche differentiation, and like earlier work on Neandertals and modern humans, it is premised on the idea that one species is dominating a cognitive niche and the other pecking at the edges. That's not differentiation, that's domination.
Obviously I appreciate the thoughtful and deep reading of our work on H. naledi, and our engagement with these arguments must take a much longer form. For now, I caution against the "feel-good" maintenance of the "modern human revolution" viewpoint that this paper represents.
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Lactase persistence and dairying on the surface seem to be a simple and compelling example of gene-culture coevolution in humans. And yet there are patterns that confound the simplistic story. I appreciate that @Maddy_Bleasdale et al discuss some of those. nature.com/articles/s4146…
Several aspects of lactase persistence genetics are not being covered well by press accounts of this paper. Journalists have gone with a pretty simple "counterintuitive lede", i.e., people were drinking milk before lactase persistence mutations were common.
A look at the great frequency maps in the paper is enough to remind folks of the reality that most lactase persistence-associated alleles *still* aren't very common. They have frequency maxima of 2-5% today and are highly localized.
Most people have around a chromosome's worth of DNA from Neandertals, spread in small pieces across all 46 chromosomes.
Or, if you're of male sex, 45 out of 46 of them.
For western Eurasian peoples, the average amount of Neandertal DNA across the genome is around 120 megabases. Eastern Eurasian peoples have a bit more. Chromosome 13 is 114 Mb and 12 is 133 Mb.
I'll be making a tabulation of Neandertal specimens that have yielded molecular (DNA, proteomic) sequence information. I know there are more than 30 but I'd like to get an actual count and link photos where possible. This will take a while, and I'll add to this thread as I go.
The first mtDNA fragments published from any Neandertal specimen were from the humerus of the Neandertal 1 skeleton, from the Kleine Feldhofer Grotte near Mettmann, Germany. The partial skeleton was recovered in 1856. Sequencing by Matthias Krings et al. doi.org/10.1016/S0092-…
Ralf Schmitz and Jürgen Thissen relocated sediments from the Kleine Feldhofer Grotte, excavating in 1997 and 2000. They found new bone fragments that refit the Neandertal 1 skeleton and a humerus fragment (NN 1) that must represent a second individual. doi.org/10.1073/pnas.1…
Sometime between 370-150,000 years ago Neandertals got a Y chromosome from a more modern-like source population. This ultimately spread throughout all later Neandertal populations from which anyone has sampled DNA.
The Neandertals and Denisovans originated from a common source population with African ancestors of modern humans sometime between 600 and 700,000 years ago.
This means that Neandertals and their Y chromosome donor population had begun to differentiate from each other between 230,000 and 600,000 years before this Y chromosome introgression happened.
I strongly hesitate to use the term "modern humans" in this context. The Y chromosome of Neandertals is from a Y clade that is extinct today, outside the range of present-day Y variation. What we don't know is where that Y clade fit into our structured ancestral populations.
Both the Y chromosome (~250ka) and mtDNA (~200ka) of modern humans have MRCA younger than the time we think that today's populations of modern people began to differentiate (~300ka). Of course, any of these dates could be wrong...
Generally, human chromosomes are numbered in order of length. Chromosome 1 is the longest, then 2, and so on. Most people know the sex chromosomes are exceptions; X is longer than 8, Y shorter than 20. Fewer know that chromosome 20 is longer than 19. And 22 is longer than 21.
In the 1950s and 1960s, there was a lot of diversity in how different research groups numbered human chromosomes. Length was an obvious criterion, but to reliably sort karyotypes, scientists had to rely on additional characteristics including centromere position and arm lengths.
The human genetics community worked to standardize the nomenclature of chromosomes in the 1960s, settling on today's numbers, before methods of measuring chromosome length were precise enough to accurately rank relative lengths of the shortest chromosomes.