Hello, it’s a gorgeous Thursday! Time for a #DBIOtweetorial by Eleni Katifori, commissioned by the awesome folks at #engageDBIO! Let's get sciencing!
Large organisms cannot survive without a circulatory system. Diffusion is too slow to provide enough nutrients. For this reason, plants, animals and fungi have evolved complex irrigation systems.
Circulatory systems roughly follow some simple design principles. They are composed of wide vessels, “highways” for long distance transport, and smaller, distributary channels, which do the actual delivery of the load. Similar function can result in similar design!
Flow networks in biology can be approximated by resistor networks, like the ones we learn in Physics 101. The voltage is like the pressure, the electric current is like a fluidic current, and the electric resistance is the fluidic resistance, as derived by Poisseuille’ law.
The resistor models are quite successful! However, to model real networks, we need more. We need to store fluid (capacitors), to account for inertia (inductors), to use valves (diodes), and to consider other nonlinearities.
With capacitors and inductors, we can have a propagating energy pulse like in transmission lines. The amplitude of the pulse is attenuated as it moves, like our own pulse that disappears by the time it reaches the capillaries.
Biological flow networks are under huge evolutionary pressure to perform efficiently their tasks, while keeping building costs low. Murray’s law predicts the scaling law by minimizing the energy loss due to viscous forces.
But how do organisms build their optimal (or near optimal) network architectures? There is no grand design: they build and adapt their networks based on local rules that modify the link strength based on local information.
These local adaptation rules are very powerful! Depending on the adaptation parameters, the networks can form to optimally perform a broad array of functions, and can adapt when conditions are changing. This happens all the time in our circulation.
What are other principles that networks might care to optimize? They can be uniformity of nutrient delivery, minimization of average pressure drop in the network, robustness, time it takes to deliver the load and more. There's a lot of very interesting recent work exploring this!
Da Vinci noticed the many similarities between human circulation and rivers. The study of vascular systems can teach us a lot about other flow networks, natural or human-made!
Thanks to the fantastic #EngageDBIO team for commissioning this #DBIOTweetorial and takeover of @ApsDbio today, and for the great content they bring to our community! Have fun sciencing!
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It is Thursday, must be time for a #DBIOTweetorial, brought to you by @NavishWadhwa and Yuhai Tu. We will drop in the tweets over the next hour or so. Counting on you to comment, ask questions, have discussions…let’s show the world that biophysicists don’t hold back. #EngageDBIO
Gather up, friends. Did you see the internet-famous structure of the bacterial flagellar motor? Did it make you want to know more? Then buckle up, we are about to take a deep dive into nature’s most marvelous bio-nanomachine.
First, a quick recap. Many bacteria swim by rotating helical flagella. Rotation of these flagella is powered by a highly complex bio-nanomachine, the flagellar motor. It is a full-on electric motor, complete with a stator, a rotor, a driveshaft, a universal joint, and bushings.
An organism’s genome encodes the rules for how it looks, grows, and responds to the environment in a series of “A”s, “C”s, “G”s and “T”s:
The genes encode proteins – molecular “parts” that assemble into cellular systems. For example, we often depict proteins in metabolism as lines that interconvert chemical species inside the cell. These diagrams contain a lot of information, but can be difficult to understand.
On a first glance, bacterial cell division may seem simple. In reality, it is the culmination of precisely orchestrated interplay between cytoplasmic and extracellular processes. #EngageDBIO#DBIOTweetorial
To divide, bacteria must: grow, replicate and segregate their chromosome, add new cell wall perpendicular to the old cell wall, and separate. That’s a lot of work! #EngageDBIO#DBIOTweetorial
@taekjip is taking over @ApsDbio today to run a tweetorial titled 'single is good but a couple is better'.
Single molecule methods are allowing direct detection of subpopulations & dynamics, and correlation between multiple observables, with rapidly rising popularity. Technical milestones in single molecule fluorescence can be seen here.
Many flavors of single molecule methods. (1) fluorescence (2) mechanical (3) electrical & (4) in silico. All four have been honored by Nobel prizes in physics, chemistry and physiology.
It’s Tweetorial Thursday, so time for a #DBIOtweetorial, brought to you by the fantastic #engageDBIO team! Guest this week @SulianaManley, on why there is “No free lunch in microscopy”
For biophysicists, microscopy is a major tool and an exciting outlet for innovation. If you are a microscopy user more than a developer, it can seem like a major new method is published every week! Even just considering localization microscopy ...
So, how do we make sense of all this method development, and what is driving it? Sometimes developers chase world records in spatial resolution, temporal resolution, depth, or long-term imaging.
Like a city, inside of the cell is organised by highways and roads (microtubules, actin), motors (dynein, kinesins, myosins) cargoes (e.g. receptors in endosomes, viruses) post-offices sorting cargoes (sorting endosomes), garbage clean-up (autophagosomes, lysosomes) and much more
Every piece of the puzzle listed above is a field on its own! We now know about the exquisite dynamics of microtubules, or how motors move. We know about the process of endocytosis at the plasma membrane and proteins that define distinct endosomal populations (Rabs)