Covid (@UCSF) Chronicles, Day 504

To me, the most confusing time in the pandemic was May 2020, as we exited lockdown and nobody quite knew what they should & shouldn’t do (clean the mail? touch the dog?).

But now is giving May 2020 a run for its money. (🧵1/25)
Today, a smorgasbord of some of the most confusing issues: Delta, masking, vaccine efficacy, vax mandates, boosters.

Bottom line is that my thinking has changed. Six months ago, I felt like I understood all of the key variables when it came to the virus & vaccines. And… (2/25)
…when I learned that a variable had changed w/ Delta, I assumed nothing else had.

But now I see that it’s best to assume that nearly every parameter is different – usually for the worse. That creates cognitive vertigo, but it matches the facts on the ground. (see below.)(3/25)
This superb thread by @EpiEllie walks us through the math behind Delta’s threat. With a virus that’s 2.5 times more infectious, levels of immunity that would have tamped down the spread of the old virus are no longer adequate to do so with Delta. (4/25)
Exhibit A: SF. 70% of the population is fully vaccinated, yet cases are 20x what they were in June (Fig). And with more virus around, there’s more exposure to virus, & so it spirals up. Things are even worse in places w/ lower vaccine rates, such as in the great states of…(5/25)
… FL (49% fully vaxxed), TX (44%), & MO (42%)(Fig). In these states, most people are no better protected vs Covid than they were in early 2020. But the virus is 2.5x better at its job of infecting people. Moreover, CDC now feels that Delta Covid cases are more serious too.(6/25)
Nothing stands in isolation. Here in highly vaxxed SF, everybody’s wearing masks – we’re bummed but there’s little pushback. In states where vaccine rates are low & vulnerability is enormous, many leaders & people “don’t believe” in masks. And often in vaccines. Go figure. (7/25)
That's why I’m all for vaccine mandates. As Einstein (may have) said, “Insanity is doing the same thing over & over & expecting a different result.” We’ve tried education, free vax, sympathy, shaming, & incentives. Our future depends on more vaxxing, despite the objections.(8/25)
Even if vax mandates (plus upcoming formal FDA approval nytimes.com/2021/08/03/us/…) turn the tide, it’ll be months before we get to high enough vaccine rates to tamp down the virus. Until then, anything other than universal indoor masking is simply bonkers. (9/25)
Speaking of being unprotected, the next battleground will be over boosters. So much of Covid has pitted individual rights/choices vs. community need. There now seems little doubt that 4 groups will need boosters to deal w/ waning or inadequate immunity from vaccines:... (10/25)
a) Immunocompromised; b) Elders (?age); c) vax w/ J&J; & d) vaxxed >6 mths ago. My read of evidence: it would be reasonable to offer boosters to all 4 groups today – if the only issue was risks vs benefits to them as individuals. But as @EpiEllie explained, as a society… (11/25)
… we should focus on vaxxing unvaxxed people (vs giving booster) if resources were limited.
But, at least in the U.S., they’re not – there’s so much vaccine around that some is being discarded nytimes.com/2021/08/01/us/… (Of course, if we could sort out the logistics, the… (12/25)
… next dose should really go to Africa or India, but that seems unlikely). Given the probable benefit for individuals, not surprised we’re starting to see booster-seeking fibbing & wink-winking. This’ll screw up vaccine tracking, which is bad. Is it unethical? Tough call.(13/25)
Solution: approve boosters for those 4 groups ASAP as long as vax surplus holds (evidence seems persuasive that benefits outweigh risks), as several European countries have done. washingtonpost.com/world/europe/c… My guess is that FDA/CDC are also hesitating on boosters because… (14/25)
… they fear that green-lighting them will send message to some vax-hesitant folks that vaccines don’t work. I get that, but these kind of Covid mind games (other: call breakthrough infections “rare” so as not to discourage vax) don’t work & serve to undermine credibility.(15/25)
I’m aware that this entire thread has been a major downer. Believe me, I wanted to get back to normal as much as you do.

One bright piece of news amidst the gloom is that – for reasons clear to no one – Delta appears to peak and fall quickly (here is the UK curve)…, (16/25)
… and perhaps it’ll do the same in the U.S. Great! But to the degree that vaccine or infection-related immunity partly explains the peak-and-fall, we might well see another surge in a few months, whether from waning immunity, a new & nastier variant, or some combination.(17/25)
Is there a way out? Delta is so infectious that the end-game may be near-universal immunity thru vaccination & – mostly in the unvaxxed – infection. The # of deaths in the latter category will be high; truly tragic since – unlike in 2020 – most will have been preventable. (18/25)
It’s obvious what an unvaccinated person should do: get vaccinated ASAP, and stay super-safe until fully vaxxed (remember, shot #1 doesn't protect against Delta the way it used to). Particularly in a high case prevalence region, your chance of catching the virus has… (19/25)
… never been higher, and – while treatments have improved – there’s still a decent chance of a stormy course, including Long Covid, hospitalization, and (depending on your risk factors) death. I’d be afraid. Yes, I'd be very afraid. (20/25)
What should a vaccinated person do? That’s trickier. Everybody’s got to choose their own risk tolerance, which'll depend on your psychological state & your risk factors for a bad outcome. It should also be influenced by local prevalence – your chances of a breakthrough...(21/25)
…infection are much higher if you’re in a place with a high case rate than if you’re in Vermont. And as I’ve said, even though the chances of me dying or being hospitalized w/ Covid are low, they’re not zero. And breakthrough cases of Delta, we now know, can potentially…(22/25)
… be spread to others – mostly unvaccinated (including kids <12) or less well protected people (elderly, immunocompromised). They can also be spread to vaccinated folks (though vaxed-to-vaxed spread likely is truly "rare"). That knowledge has added to my level of caution.(23/25)
As a 63-year-old guy vaxxed w/ Pfizer in Dec-Jan, no booster yet, & living in still-fairly-low prevalence SF, what am I doing? I haven’t cancelled flights, though I will if trip's elective. When I fly, I’m wearing N95 for the whole flight. In indoor spaces (stores, work)…(24/25)
... I’m double masking (cloth/surgical). No more indoor dining, & sadly no more poker w/ vaxxed pals. I’ll peel off protections as cases fall, particularly after my booster.

You’ll make your own choices, but don’t underestimate Delta. As the CDC said, it’s a new war. (25/25)

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More from @Bob_Wachter

30 Jul
The CDC document that was discussed in @washingtonpost today washingtonpost.com/health/2021/07… is now on line: context-cdn.washingtonpost.com/notes/prod/def…
The WashPo shared it with me before publication for reactions, and I'm quoted. Some thoughts follow. (1/13)
My overall view: we knew much of what's in here, but there's some new information & analysis. In some cases it's brand new, in others it clarified something we knew before. In virtually all cases, the new stuff's a bit worse than I expected. Here are the key findings: (2/13)
1) Delta is much more infectious than the original: they estimate an Ro of 5-9, vs. the 2-3 for the original, which makes Delta "as transmissible as chicken pox." We've been estimating Ro of ~6 for Delta, or ~2x as infectious as original. It may be a bit worse than that.(3/13)
Read 13 tweets
26 Jul
Covid (@UCSF) Chronicles, Day 495

When I began my tweets 494d ago, it was before we had reliable local, US, or world data. So I focused on data from @UCSFHospitals. Today, we’re awash in data, yet I find my hospital's data still provides a unique lens into our situation. (1/20)
So today, a few data points from @UCSF, with my interpretation. They reinforce the case that the combo of Delta & relaxed behavior is leading to a powerful & worrisome upsurge that requires a change in approach. I knew things were bad, but it’s even worse than I thought. (2/20)
What’s particularly noteworthy about @UCSF experience is that it’s in a city w/ the nation’s highest vax rate. And cases are rising fast in our employees, of whom 93% are vaxxed. (Special thanks to Ralph Gonzales, Bob Kosnik & @SaraMurrayMD for some of the data.) Here goes:(3/20)
Read 20 tweets
15 Jul
If you're wondering how bad Delta really is, even in highly vaccinated SF (76% of >age 12 fully vaxxed) & still w/ a lot of masking (most folks in stores), we're seeing a pretty steep Covid uptick. Daily cases up 4-fold (10->42; Fig L), hospital pts doubled (9->19; R)(Thread 1/4) ImageImage
Uptick mirrored @UCSFHospitals: Covid inpatients (we were at ~3 pts two-wks ago) now 13 (Fig L). Overall test positivity rate was well below 1%; it's now up to 2.6% (Fig R). Even more worrisome, test positivity rate in asymptomatic pts was ~0.15%, now up 6-fold to 0.9%. (2/4) ImageImage
I don't have vaccinated/unvaxxed breakdown for SF & UCSF – I assume most severe cases are in unvaxxed. But even for vaxxed, w/ more Covid in air expect more breakthru cases. As for me, I'm back to double-mask in stores. Still indoor dining but might abort if trends continue.(3/4)
Read 4 tweets
13 Jun
Covid (@UCSF) Chronicles, Day 453

1/ I know everybody’s sick of playing 3-dimensional Covid chess. Sorry, but the Delta variant forces us back to the chess board. Ergo, this 🧵.
If you’re fully vaxxed, I wouldn’t be too worried, especially if you’re in a highly vaxxed region.
2/ If you’re not vaccinated: I’d be afraid. Maybe even very afraid.
Why? Let’s start with the things that we know about the current situation, then layer in new information about the Delta (aka, Indian) variant, B.1.617.2 Then we’ll end with what I’d suggest you, and we, do.
3/ Current U.S. situation is good. Cases, hospitalizations, & deaths are falling fast, largely due to our fabulous vaccines. In SF – w/ 70% of people aged >12 fully vaxxed – we’re nearly in a post-Covid world. Everybody’s opening up, including (on Tues) CA. That’s fine…for now.
Read 25 tweets
18 May
1/ Covid @UCSF Chronicles, Day 426

I’ve been letting the new CDC guidelines marinate for a few days, getting over the shock of seeing an agency that’s usually a trailing indicator so “out there.” I tried, but I can’t talk myself out of seeing the new recs as too far, too fast.
2/ This afternoon, my state of California rendered the same judgment, delaying the lifting of indoor masking requirements until June 15th. The extra month will make a big difference – it’ll give folks who just got access to vaccines in April & May time to get fully vaccinated…
3/ … and also afford 12-15 year-olds a chance to be vaccinated. It also means – if the projections are right – that there will be far less virus in the air by mid-June, which will make indoor activities safer, even if some unvaccinated people take off their masks.
Read 25 tweets
18 Apr
Yesterday’s @WashingtonPost piece on flying-after-vaccination, in which I said I won’t eat on an airplane, created a bit of a kerfuffle. washingtonpost.com/travel/tips/fl… Even @natesilver538 weighed in today.

Let me explain my thinking. (A 🧵) (1/25)
I am fully vaccinated (2 doses of Pfizer in Dec/Jan). As such, I consider myself exceedingly unlikely to get very sick and die from Covid, though as the number of vaccinated people grows, we are beginning to hear about a few breakthrough infections.
cdc.gov/vaccines/covid… (2/25)
Most breakthrough infections are mild but there are rare ones that are serious. Of >75M people fully vaxxed as of 4/13, CDC has logged 5814 breakthrough infctns (documented Covid post-full vaccination). That’s not surprising. As we know, the vaccines aren't 100% protective.(3/25)
Read 25 tweets

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