Muge Cevik Profile picture
Aug 24, 2021 25 tweets 10 min read Read on X
There is a lot of concern/confusion about vaccine effectiveness against the delta variant. How effective are the vaccines against Delta & how to interpret real-world observational data? So much misinformation is being circulated, so this thread brings key data together. 🧵(1/n)
Vaccine efficacy measures the relative reduction in infection/disease for the vaccinated vs unvaccinated arm. For instance, a vaccine that eliminates all risk would have an efficacy of 100%. Efficacy of 50% means you have a 50% reduced risk compared to an unvaxxed person. (2/n) Image
All studies assessing the performance of vaccines against Delta are based on real-world data (vaccine effectiveness), which are influenced by variant transmissibility, human behaviour, and immunity status of the population, therefore they require careful interpretation. (3/n) Image
Vaccines are designed to protect symptomatic illness; therefore, the vaccine effectiveness (VE) is often referred to as the performance against this primary endpoint. But some studies also report VE against hospitalisation and infection, which I will report separately. (4/n)
1- Vaccine effectiveness (VE) against hospitalisation:
The evidence so far suggests that VE against hospitalisations is highly preserved against Delta. As you can see in this figure, high protection against hospitalisation (>80%) is maintained after the 2nd dose. (5/n) Image
2- VE against symptomatic illness:
This is also very similar across the board, demonstrating preserved effectiveness against symptomatic Delta w/the Israel data being an outlier, for which we have yet to see methods/details. Let’s take a look at these studies. (6/n) Image
A test-negative case-control analysis from England demonstrate that after the 2nd dose of Pfizer and Oxford vaccines, effectiveness against symptomatic delta illness remained high, with a modest decline observed w/ delta compared to alpha. (7/n)
nejm.org/doi/full/10.10… Image
A study from Canada also showed preserved VE against symptomatic delta illness w/ a modest decline compared to alpha. Both studies showed reduced protection against symptomatic illness w/ 1st dose, but VE recovered after the 2nd dose. (8/n)
medrxiv.org/content/10.110… Image
Data published by the Israel MoH caused a lot of concern, suggesting that the Pfizer VE against symptomatic infection fell to 40%, lower than seen in other studies. While we have yet to see details of this analysis, there are likely several confounders to consider. (9/n) Image
3- VE against infection:
This measures all PCR +ve cases that are observed in vaccinated vs unvaccinated group, regardless of symptoms. These cases also include those who briefly become swab +ve before the immune system kicks in, but never develop any symptoms or illness. (10/n)
Unfortunately, there has been very little systematic evaluation of VE against asymptomatic swab positivity. These estimates are affected by various biases such as testing criteria, behaviour, exposure risk, immunity status, and community prevalence. (11/n)
So, it needs to be recognised that VE for infection is a dynamic figure influenced by several factors, thus estimates vary quite a lot. Pre-delta studies showed estimated 55-80% VE against infection, and there is a modest decline seen w/delta. (12/n)
academic.oup.com/ofid/advance-a… Image
Recent UK analysis based on systematic testing demonstrate that Pfizer & Oxford vaccines remain highly protective against any PCR +ve infection, similar VE seen w/Alpha vs Delta, including those with Ct <30 (high viral load). (13/n)
ndm.ox.ac.uk/files/coronavi… Image
According to REACT data (a random sample of the population in England), VE against swab positivity was 58% (for strong positives). In this study, 1 in 25 double-vaxxed individuals (3.8%) tested swab-positive after covid exposure. (14/n)
spiral.imperial.ac.uk/handle/10044/1… Image
A test-negative case-control study from Qatar demonstrated high effectiveness against swab positivity with delta, 60% w/ Pfizer and 86% w/ Moderna. However, follow up period may not be the same for both vax groups. (15/n)
medrxiv.org/content/10.110… Image
According to Mayo clinic data, based on routine patient-initiated testing, 2 doses of mRNA vaccines still provide high effectiveness against infection, 76% w/Moderna and 42% w/Pfizer vaccines. Follow up period may not be the same for both vax groups (16/n)
medrxiv.org/content/10.110… Image
In a nursing home resident cohort in the US (routine surveillance data), 2 doses of mRNA vaccines were 75% effective against infection in early 2021, which declined to 53% when Delta predominated. (17/n)
cdc.gov/mmwr/volumes/7… Image
Based on routine surveillance data in NYC, the overall age-adjusted vaccine effectiveness against infection was 80% w/delta and some waning was seen in recent months in 18-49yo. However, these analyses didn't account for prior infection in unvaxxed (18/n)
cdc.gov/mmwr/volumes/7… Image
Finally, recent data based on breakthrough infections in Utah showed an estimated 82% VE against infection, w/ a modest reduction corresponding to delta expansion. (19/n) medrxiv.org/content/10.110… Image
In summary, currently available vaccines work exceptionally well against Delta w/ high effectiveness demonstrated for symptomatic illness and hospitalisation. They also show high effectiveness in preventing swab positivity w/a modest decline likely due to Delta. (20/n)
While the modest decline in effectiveness against infection causes some concern, as discussed, VE for infection is a dynamic figure & changes over time. Therefore, it is inaccurate to reference a single percentage & imply a massive reduction against infection due to delta. (21/n)
There are also concerns about waning immunity; however, this often refers to effectiveness against infection, not symptomatic or severe illness. And it’s critical to consider caveats when interpreting these results. (22/n)
What we’re observing is very much aligned w/prior knowledge. Protection from symptomatic illness is easier to achieve than infection. B/c while neutralising Abs decrease over time, protective immunity provided by memory T/B cells is preserved & expected to be long-lasting (23/n) Image
It is essential to remember vaccines do not work to bounce incoming virus particles off you. And even if infected, vaccines continue to provide significant protection against symptomatic illness and hospitalisations. END
Addendum: According to a new pre-print, Israel data now pretty much align w/ data from UK/US. VE for severe disease is still >85% after 6m, VE for infection wanes over time. VE for symptomatic illness is not interpretable as discussed in tweet #9. (25/n)

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More from @mugecevik

Jul 20, 2022
It has been 2 months since the first cases were reported in the MPX multi-country outbreak, & the # of cases has now crossed 14k globally. While accurate information is critical to staying ahead, there is so much misinformation. An update on the current status of #monkeypox.🧵
Epidemiology:
Overall, over 14k MPX cases have been detected in 70 countries. 7 African countries have reported ~1400 cases this year. Some “non-endemic” countries are seeing cases w/o travel links or exporting cases, indicating ongoing community transmission. (n/1) Image
• 99.5% of cases are among men (where data available) 
• The mean age is 37
• Evidence continues to suggest community transmission with a disproportionate incidence among gay, bisexual and other men who have sex with men (GBMSM) gov.uk/government/pub…  (n/2) Image
Read 31 tweets
May 21, 2022
As the monkeypox virus (MPX) outbreak continues, a lot of data emerging in real-time & being rapidly disseminated (as well as misinformation). I complied the unfolding scientific data (with direct links to papers and threads) on what we (don’t) know so far. #IDTwitter 🧵(1/n)
First, MPXV is not a novel virus. It is a viral zoonosis first discovered in 1958, with the first human infection reported in 1970. It is classified as a high priority pathogen by WHO, cases mostly identified in central & western Africa until now. (2/n) (who.int/news-room/fact…\)
Confirmed and suspected cases of #MonkeyPox now reached 145 among 13 countries with 20 cases in the UK. The main concern is that there are non-travel associated cases in Europe, meaning there is likely unnoticed community transmission. (3/n)
Read 29 tweets
Apr 25, 2022
Late breaker session at #ECCMID2022 on acute hepatitis cases of unknown origin in children.
So far, 169 cases have been reported from 11 countries since first case was identified in 31 March. 17 have required liver transplant & at least one death has been reported. #IDTwitter
Almost all cases had high transaminases, majority of children have been hospitalised. No common exposure has been identified, no link to COVID19 vaccination. Adenovirus F41 was identified in several cases, but it doesn’t fully explain the clinical severity observed. #ECCMID2022
But there are still many uncertainties about acute hepatitis cases observed. Especially the # of cases, exact age group, clinical presentation, uncertain test results as not all cases were tested for adenovirus, risk factors and transmission routes remain unclear. #ECCMID2022
Read 15 tweets
Dec 15, 2021
Very interesting analyses about the virology of #Omicron, which may explain the faster spread of this variant.

According to a new lab study, Omicron infects & multiplies ~70x faster than the Delta variant and the wild type SARS-CoV-2 in the human bronchus, but not in the lung.
In this ex vivo study (press release), Michael Chan, Malik Peiris & John Nicholls et al. @hkumed show that at 24h after infection Omicron replicated ~70x faster than Delta in bronchus. Interestingly, it replicated ~10x less efficiently in the lung tissue. hkumed.hk/96b127/
Another analysis by @BalazsLab also supports these findings. In this lab study w/ pseudoviruses, Omicron showed greater ability to infect cells than other variants, which was ~ 4 times more infectious than the original strain, also more than Delta. medrxiv.org/content/10.110…
Read 8 tweets
Dec 7, 2021
Important preliminary data from SA looking at whether vaccine elicited antibodies are still effective against #Omicron.

Good & bad news: There is a big drop in neutralisation activity, but it's partial & hybrid (vax + infection) holds fairly well. 🧵

This is a live virus neutralisation assay. Neutralisation studies can tell us whether levels of Ab in the blood (convalescent and vaccinated plasma) are high enough to prevent the virus from infecting cells in the lab.

.@sigallab & colleagues tested plasma from those who received vax only (orange) & those who had vax + previous infection (green) and showed a significant (~40x) decline in neutralisation activity, but this was not a complete escape & reduction was less in hybrid anti-sera.
Read 15 tweets
Dec 3, 2021
🦠 There’s a lot we don’t yet understand about Omicron, including its impact on immunity and what it means for vaccines. New data will be emerging over the next few wks, which could be misinterpreted w/o context. What we might expect & how to interpret the emerging data? 🧵(1/n)
1- Genomic data:
The biggest concern with omicron is that it contains >30 mutations in just the spike protein, the part which helps it enter human cells and the target for vaccines. This mutation profile is very different than other VOCs. (2/n) Image
There are plausible biological consequences of some of these mutations, but we don't really know the combined effect of all these mutations, so full significance of omicron is uncertain. (3/n) Image
Read 37 tweets

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