“Immortal Time Bias” produces exaggerated positive results in observational studies. Thanks @DrToddLee for pointing it out

e.g. Booster studies give reliable results when subjects are randomised to booster or placebo. RCT ensures ~equal comparison.

1/9

academic.oup.com/aje/article/16…
What is immortal time bias?

When a group under observation has a fixed advantage at the outset.

In heart transplantation VS non heart transplantation studies, this bias was first described (those who got the transplant had the opportunity to survive till they got operated)

2/
That is, the transplanted group were the healthier of the lot, they survived longer than those who died while waiting for surgery.

This was projected as an apparent outcome of transplant in some studies.

3/
In the booster context, a non randomised observational study is prone to numerous bias, almost all of which favour the booster group.

The study was done during a surge of cases in Israel. Those who got the booster eventually had to meet one basic condition: “not to die”

4/
Yes, though it sounds darkly funny, this is a form of bias. That is, only if you survived the pre-booster period will you be able to get the booster.

In other words, some people got “selected out” before being boosted simply because they died during the surge, or got ill.

5/
Such individuals remained in the two dose group, their outcomes got counted with the 2 dose group.

Those who were healthier and survived the early part of the surge, went on to get a booster dose because they felt well enough (and were alive to receive it).

6/
How do we know this bias altered the results?

The authors allude to this by calling the “Healthy Vaccinee Bias”

They do a secondary analysis, comparing the early 3-7 day period to post 2 weeks after booster.

And the difference is clear.

7/
This secondary analysis results in a dramatic drop in their original benefit estimate.

This is because the “immortal time bias” & “lower testing rate” bias are somewhat corrected for.

However, this does not correct for basic differences like covid appropriate behaviour.

8/
In summary, unless it is a randomised controlled trial, many forms of bias will creep in, and distort the conclusions in favour of the intervention.

This form of bias has been called out in several pharma studies.

9/9

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More from @RajeevJayadevan

11 Dec
Long lived T memory cells one year after COVID-19.

Authors studied CD8 memory cells that persisted after the initial effector response, followed by contraction.

They noted phenotypical differences between memory cells in mild & severe COVID-19.

1/12

nature.com/articles/s4158…
Authors believe that factors such as antigen availability, type of antigen-presenting cells, and cytokine milieu – might influence the type of memory formed.

Note: T cell memory cells are of multiple categories, not all of which are detected in peripheral blood.

2/
Some memory cells live in tissue and others in lymph nodes.

This study looked only at peripheral blood, and hence is not a description of T rm or T cm memory cells.

T rm’s live in tissues and do not move out. They defend tissues (e.g. lungs & mucosa) when an attack occurs.

3/
Read 16 tweets
9 Dec
Large study on boosters in Israel

Summary

>60 age

Risk of death among those who got infected: No difference between 2 or 3 dose groups

Risk of picking up an infection was 12 times lower after booster

Note: this was not a randomised trial

1/10

nejm.org/doi/full/10.10… Image
The study compared the outcomes among 7,58,118 people who got booster with 85,090 who did not.

We do not know if there was a baseline difference in COVID- appropriate behaviour between the 2 groups.

Assuming no such difference, infection risk is reduced 12 fold by booster.

2/
A few calculations based on the table:

Age > 60, non boosted (2 dose)

Infection rate 62 per 100,000 person days
Death rate 2.3
Ratio = 1 : 27

Age >60 (boosted)
Infection rate 5.1 per 100,000 person days
Death rate 0.2
Ratio = 1 : 26

(Ratio = chance of death if infected)

3/ Image
Read 10 tweets
9 Dec
No waning of immunity against severe disease: New York data NEJM

Note the effectiveness is calculated by comparing with unvaccinated group, which is gradually acquiring immunity from natural infection. Hence, there will be a decrease in the difference as time moves forward.

1/n ImageImage
There is a marked difference in hospitalisation rates among vaccinated people compared to unvaccinated.

I have calculated some numbers for three age groups👇

🔹For >65

Unvax Risk of Hospitalisation 1:87 (1:1000 for vax)
Difference is 12 times

See below 👇
🔹For 50-64

Unvax Risk of Hospitalisation 1:186 (1:3636 for vax)
Difference is 20 times

🔹For 18-49

Unvax Risk of Hospitalisation 1:453 (1:9899 for vax)
Difference is 22 times

All calculations based on Pfizer (see table below for others) Image
Read 4 tweets
9 Dec
Immunology simplified

A map of our immune response to viral infection shared by @papaphone2002

I have added (in red) the role of the much-discussed neutralising antibody, thread👇

Our immunity team has so many more players, who cannot be fooled by the virus.

Here’s why

1/5
Please note the diagram only presents an outline, not the whole thing.

Neutralising antibodies form only a tiny fraction of our TOTAL antibody response. Most antibodies are produced AFTER the attack occurs, helping eliminate virus.

(Labs measure Ab’s ALREADY in circulation)

2/
In other words, neutralising antibodies aren’t everything.

And, importantly, a “loss of neutralisation” (‼️🔴alarmist language that lab researchers love to use while describing their work to a clueless public) doesn’t mean “we have lost against the virus”.

3/
Read 15 tweets
8 Dec
Tuesday COVID meeting updates this week (been holding these ever since the onset of the pandemic)

#1

In a series of 70 consecutive COVID deaths reported at a large Kerala hospital, 69 were unvaccinated, one had received 1 dose vaccine.

That was 98.6% unvaccinated, May-Sept

1/
This data is powerful evidence that vaccination has made a significant reduction in the severe outcomes of delta.

Remember, these are vaccines based on the old Wuhan strain of the SARS-CoV-2 virus.

Yet they are protective against delta variant.

This is hard evidence.

2/
This is real-world evidence that vaccine protection (against severe disease, mainly cell mediated immunity) kicks in with the first dose itself.

In fact we know from lab studies that T cells arrive by day 10 after the first dose.

Let me explain the immunology.

3/
Read 9 tweets
8 Dec
Discussed a few aspects of vaccination among children in India with @snehamordani @IndiaToday
Link to 24 minute video of the panel discussion 👇

Read 4 tweets

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