We followed 4 cohorts longitudinally for up to 6 months:
-Delta breakthrough (vaccinated then infected)
-subjects infected and then vaccinated (2x and 3x)
-vaccinated-only (2x and 3x)
-infected-only
in collaboration with @HelenChuMD and her HAARVI team.
2/15
Serum IgG binding titers correlated with the number of SARS-CoV-2 spike 'exposures' through vaccination and/or infection and were therefore highest for 3x vaccinated subjects (infected or not) and Delta breakthrough cases.
3/15
We observed a similar trend for SARS-CoV-1 cross-reactive sarbecovirus antibody binding responses, which roughly correlated with SARS-CoV-2 binding titers, but not with embecovirus (OC43/HKU1) binding titers that remained unchanged across all cohorts.
4/15
These latter data correlate with our previous observations that fusion machinery (S2)-directed antibodies, such as those recognizing the stem helix, are rare in the memory B cell repertoire of infected or vaccinated individuals.
We observed highly potent and durable serum neutralizing activity against #SARSCoV2 ancestral (G614) S pseudovirus for Delta breakthrough and infected/vaccinated subjects. 3x vaccination of naive individuals led to comparably potent neutralizing responses, great news!
6/15
Elicitation of potent neutralizing antibody responses through repeated 'exposures' also enhanced resilience
to mutations observed in variants of concern, such as Delta and Beta, for Delta breakthrough cases, infected/vaccinated subjects and 3x vaccinated individuals.
7/15
Neutralization of the more genetically divergent SARS-CoV-1 S pseudovirus, however, is a lot tougher (24-36x reduction of inhibition). Infected individuals that were 3x vaccinated stood out the most in this assay.
8/15
These data support strongly administrating a 3rd vaccine dose to people who have not been previously infected but also emphasize the challenges associated with eliciting broad immunity even 'just' within the sarbecovirus subgenus.
9/15
Fortunately, @coronalexington has been working on this and is already designing vaccines eliciting broader sarbecovirus immunity and protection in collaboration with @KingLabIPD@Baric_Lab
Have you heard of the recently discovered 8th human-infecting #coronavirus designated CCoV-HuPn-2018?
We reveal the architecture of its spike (ie infection machinery), receptor usage and antigenic properties!
CCoV-HuPn-2018 is a canine-feline recombinant alpha-#coronavirus isolated from the respiratory swab of a child hospitalized with pneumonia, indicating that more coronaviruses are spilling over to humans than previously appreciated.
We determined #cryoEM structures of the CCoV-HuPn-2018 spike in two markedly different conformational states which we propose to correspond to two snapshots of viral entry.
We show that vaccine-elicited neutralizing activity is reduced against delta and kappa and even more against delta+ relative to the vaccine-matched pseudovirus. Delta+ reduces neutralization ~ to B.1.351 (beta) which has the greatest magnitude of immune evasion thus far.
2/9
Half of the J&J-vaccinated individuals in our panel had no residual variant neutralization. Although we only analyzed neutralizing antibodies (T cells are also key players for in vivo protection), this supports offering second vaccine dose
The #SARSCoV2 CAL20.C (B.1.427/B.1.429) variant is skyrocketing in California. We describe how it evades the host immune response with @DavideCorti6@LucaPiccoli9
The #SARSCoV2 CAL20.C (B.1.427/B.1.429) variant comprises 3 spike mutations: S13I, W152C & L452R reducing plasma neutralizing activity by ~3x and ~5x for vaccine- and infection-elicited antibodies (Abs), compared to the 'ancestral' virus.
2/7
The neutralization potency of 1/3 of RBD Abs is reduced or abrogated by the L452R spike mutation present in #SARSCoV2 CAL20.C (B.1.427/B.1.429), including clinical-stage antibodies such as Eli Lilly LY-CoV555 (bamlanivimab) & Celltrion CT-P59 (regdanvimab)
We report an analysis of #SARSCoV2 spike NTD antigenic sites targeted by monoclonal antibodies (mAbs) in #COVID19 patients in collaboration with @DavideCorti6 and Matteo Samuele Pizzuto @Vir_Biotech
We found that NTD-specific mAbs account for 6-20% of mAbs cloned from memory B cells in #COVID19 patients and that the most potent of them neutralize #SARSCoV2 as efficiently as ultrapotent RBD-specific mAbs and trigger Fc-mediated effector functions effectively.
2/10
We delineated an antigenic map of the #SARSCoV2 spike NTD using #cryoEM (including a 2.2Å structure) and binding assays revealing the presence of a site of vulnerability recognized by all potently neutralizing mAbs described thus far.
We discovered a neutralizing mouse monoclonal antibody (B6) targeting the coronavirus spike fusion machinery (S2 subunit) in collaboration with @McGuire_Lab
We identified by cryoEM that B6 recognizes the spike stem helix and cross-reacts with at least 8 distinct coronavirus spikes including those of the three highly pathogenic (#SARSCoV2, SARS-CoV and MERS-CoV) and the two endemic (OC43 and HKU1) human β-coronaviruses.
2/6
B6 broadly neutralizes spike-mediated entry into cells of distantly related coronaviruses including OC43 (lineage A) as well as MERS-CoV and HKU4 (lineage C) with comparable potencies.
The peer-reviewed version of our article describing the design and evaluation of a multivalent #SARSCoV2 receptor-binding domain #COVID19 vaccine is out!
Based on our previous studies of the immune response to coronavirus infections, we identified that the receptor-binding domain is immunodominant and accounts for most of the neutralizing activity in convalescent plasma/sera.
We therefore reached out to @KingLabIPD who had recently developed a self-assembling two component protein nanoparticle platform allowing to multivalently display respiratory syncytial virus F that elicit high-titers of neutralizing antibodies.