1 of 10:

Should the rest of the world fear #Omicron?

South Africa is experiencing a very mild wave with #Omicron. The hospitals are easily coping even though case levels in Gauteng will exceed Delta levels. South Africa currently only has light restrictions.
2 of 10:

Despite light restrictions it is expected that only 15-25% of the country will be infected with #Omicron.

The South African context is unique. 70% of the population have had Covid-19 already. Only 50% of the adult population is fully vaccinated.
3 of 10:

Scenario 1: #Omicron escapes vaccine and natural immunity to a significant extent.

In this scenario, everyone in South Africa would have been vulnerable to Omicron, so the low deaths could then only be ascribed to a significantly lower virulence of the Omicron itself.
4 of 10:

In scenario 1, the rest of the world would have nothing to fear as the virus is extremely mild.

-----

Scenario 2:

#Omicron does not escape vaccine or natural immunity to any significant extent.
5 of 10:

In this scenario, the mild wave and low deaths can be ascribed to natural immunity and vaccine induced immunity. Omicron might be of similar virulence to Delta, but since so few uninfected and unvaccinated people remain, deaths are very low.
6 of 10:

In this scenario, all countries with high vaccination rates have nothing to fear, and will have similar mild waves with low deaths.
7 of 10:

Scenario 3:

Omicron escapes vaccine induced immunity, but natural immunity continues to provide excellent protection.

In this scenario, the mild wave and low deaths in South Africa is exclusively the result of high natural immunity levels.
8 of 10:

Omicron might be of similar virulence to Delta. Countries with high vaccination levels but low natural immunity levels could then still have high case levels and high death levels.
9 of 10:

In this scenario, countries would have to bite the bullet and get through the pandemic. Additional vaccine doses and coercive mandates will not help.
10 of 10:

In scenarios 1 and 2 the rest of the world has nothing to fear.

The only scenario that could make things worse for the rest of the world is scenario 3 where the vaccines do not protect against severe disease, but natural immunity does.

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More from @pieterstreicher

11 Dec
1 of 6:

#Omicron - Is this the end of the pandemic?

No restrictions will be needed to protect hospitals in any way in any country.

Gauteng, South Africa has peaked with case levels similar to Delta, but with deaths expected to be 25 times lower. Image
2 of 6:

Mild, milder, extremely mild.

As disease severity increases, the gap with Delta widens.

Keep in mind that SA is extremely vulnerable to C-19 with an average IFR of 0.5%, and 230,000 excess deaths attributable to the virus.

The IFR of #Omicron is estimated at 0.053%. ImageImageImage
3 of 6:

Gauteng cases have peaked already, and there is only a slight uptick in C-19 deaths. Total confirmed C-19 deaths from #Omicron is estimated at 640 for this wave.

Gauteng had 15,400 confirmed C-19 deaths from Delta.

data source: NICD
nicd.ac.za/diseases-a-z-i… Image
Read 6 tweets
11 Dec
1 of 6:

10 December Gauteng #Omicron update:

There is a drop in the 7 day average case levels. This is 3 days before the peak range expected.

Gauteng is experiencing a mild wave with significantly lower deaths compared to Delta. Image
2 of 6:

The peak in hospital beds will lag case levels.

With an earlier peak in cases, an earlier peak in hospital numbers can also be expected.

It is now clear that hospital beds will not get close to Delta levels.

(data source: NICD) Image
3 of 6:

As we look at more severe outcomes, the difference is even larger.

Keep in mind that SA only has light restrictions.

Clearly no restrictions are needed to protect the hospitals in any way.

(data source: NICD) Image
Read 6 tweets
9 Dec
1 of 6:

Gauteng #Omicron update:

Cases in Gauteng are likely to peak between 12 and 20 December.

The growthrate in 7 day average cases is slowing down consistently. It was 5% per day in the last day, down from 28% per day 12 days ago.
2 of 6:

The total number of patients in hospital is well below the Delta wave.

Since a peak in hospital numbers is expected in 11-21 days, this variable is not a concern anymore.

data source: NICD
nicd.ac.za/diseases-a-z-i…
3 of 6:

As we look at more severe outcomes, the numbers are even lower. ICU beds track well below the Delta trajectory.

No restrictions are needed to help hospitals in any way.
Read 6 tweets
8 Dec
1 of 6:

Gauteng #Omicron update - 8 December:

The load on hospitals is significantly lower compared to Delta, and with a peak imminent, hospitals will not be overloaded at all.

No restrictions are needed to help hospitals in any way.
2 of 6:

The total number of patients in hospital is well below the Delta wave.

Since a peak in hospital numbers is expected in 12-22 days, this variable is not a concern anymore.

data source: NICD
nicd.ac.za/diseases-a-z-i…
3 of 6:

The portion of hospital patients ending up in ICU is much lower (10%) compared to Delta (24%).

Considering that a significant portion of patients in hospital have not been infected before, or are not vaccinated, #Omicron must be significantly less virulent.
Read 6 tweets
8 Dec
1 of 4:

8 December Gauteng #Omicron short term projections:

Cases, hospitalisations and ICU beds are all running below my projections.

Ventilated beds are slightly above.
2 of 4:

The method is simple.

1. Determine the daily growth rate during the exponential phase for all variables.
(cases 30%, hosp 12%)

2. Estimate when cases will peak based on an Rt extrapolation. Alternatively, fit a Gompertz curve to the case trajectory.
(12 Dec)
3 of 4.

3. Apply a consistent drop in growth rate from the point when growth is not exponential anymore to the point when Rt=1.0. (Alt. - Gompertz fit)

4. Add a suitable lag period for the hospital variables. I used 6 days for hospital and another 5 days for ICU/vent beds.
Read 5 tweets
7 Dec
1 of 6:

7 December Gauteng #Omicron update:

Cases might exceed the Delta peak. All other variables will be significantly lower.

South Africa only has light restrictions currently (a 4hr curfew from midnight). The vulnerable continue to take extra care.
2 of 6:

Total hospital beds could be less than half of Delta levels (4,500 vs 9,200).

The growth rate is a consistent 10-12% per day.

data source: NICD

nicd.ac.za/diseases-a-z-i…
3 of 6:

Looking at more severe outcomes the gap is even larger.

ICU beds are expected to grow at 10-12% per day during the exponential phase.

ICU beds might peak at less than 570, almost 3x lower compared to the Delta peak.
Read 7 tweets

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