😷Australia National #Flu graph just out, up to 22MAY22.
🦠Early
🦠Steep
🦠Lots
🦠All over Image
To clarify again this fortnight.
Yes, there is undoubtedly more testing capacity in Aus after labs beefed up for the pandemic.
So how do we know this rise is real, & not just boffins getting bored with testing for SC2 & switching to flu virus testing? (LOL)
One approach to check this is a real rise in flu cases, not just over-testing is look at deaths, hospital beds, ICU beds with flu-confirmed patients.
🛏️there have been 3 lab-confirmed influenza deaths (+3 since last fortnight)
🛏️386 hospital admissions (+233)
🥽28 in ICU (+21)
Another way is to look at the proportion of tests that are virus-positive (=positives divided by total tested).
🧬in this last report, broken down by age, the rate is highest at about 400 per 100,000 population. Image
For context, at about this time in 2019 which was an early starting & huge flu year in Aus, the rate was about the same. In 2017, also a huge but shorter #flunami (see the initial graph), the rate was much lower (that seasons took off later than average). ImageImage
If we look at the proportion of respiratory virus tests that are influenza-positive at special "sentinel" labs, we can see the rate has been building (not sure what the denominator was in Jan-early Mar) and has spiked lately. Image
This is definitely an early flu season. Total numbers can be misleading. Test positivity rates aren't as high as in the same period in 2019 but are higher than in the same period in 2017 or 2016. Hospitalisation & ICU numbers are almost identical to 2019 but above 2017 & 2016.

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More from @MackayIM

May 26
😷Latest excellent weekly report on respiratory virus detections from the Australian State of NSW from @NSWHealth, up to last Saturday (21st).
🤒Look at this for the *trends* not as a perfect capture of every case.
health.nsw.gov.au/Infectious/cov…
😷Of course, SARS-CoV-2 is a respiratory virus so I'm including it here.
🤒Its numbers dwarf all other viruses in this report sitting relatively stably, at 10,000 reported per day, with a steady majority being RATs, the rest PCRs. 86 deaths were reported. Image
😷#Flu lab detections have risen impressively fast. Of those typed, most are Flu A/H3N2 (red) viruses with some A/H1N1 (orange) viruses.
🤒No obvious visible sign of B/Yamagata or B/Victoria lineage viruses or their variants. Image
Read 8 tweets
May 24
Signs flu was stirring were evident back in October. Yet no planning, warning, mask education or preparation. So frikkin frustrating and tiring and boring and unimaginative and stupid.
I can't speak enough to the importance of imagination in horizon scanning.
Some of the poorly captured lives lost to flu in the coming weeks and months could have been saved.
We can do one thing at a time. Often poorly. Here we are knee deep in a flu season that will be over our heads this year, and the headlines exemplify surprise. Retelling the same old stories. Nothing new. Nothing about how to exert some control over our risks (masks).
Read 6 tweets
May 19
A small thread on voting in this weekend's Australian (or earlier, if you haven't already voted) election.
It leverages the clean & clear graphics of the @AusElectoralCom and the less clean 😉humor of @thejuicemedia
Yay preferential voting system!
Yay #democracysausage #auspol
An overview of how to fill in your ballot is covered here:
aec.gov.au/media/2022/05-…
And a great explainer of what the hell a "preferential voting system" is, here:
#YourVoteCounts
If you think more visually, check out this How To Vote For The Senate (horizontal layout, white, really long ballot paper) video...
Read 8 tweets
May 14
#Flu in Australia to 08MAY2022
😷Quite the 5-year exponential rise in lab-confirmed cases (record rate?).
🤧7,173 notifications in past fortnight; 67Z% of the 10,599 for all of 2022
www1.health.gov.au/internet/main/…
😷Massive rise in #flu detections Australia-wide, especially in most recent reporting week
😷It's a FluA season across Aus, mostly A/H3N2 but still a good chunk of A/H1N1. A teensy bit of FluB in several States and Territories. WiIl FluB expand as we role towards winter?
Read 7 tweets
May 9
"Almost 40% of patients that shared a hospital room with someone with occult SARS-CoV-2 infection became infected.
The risk was highest for patients sharing rooms with individuals with very low Ct counts. Others"
#ViralLoad #InfectiousDose
"although nosocomial spread of SARS-CoV-2 is relatively rare with standard infection protocols, there is a high risk of transmission for patients in shared hospital rooms if their roommate is acutely infected."
academic.oup.com/cid/article/74…
"PCR-positive results in contacts independently increased with higher case viral loads (lower cycle threshold [Ct] values)"
"Overall, 85.4% PCR-positive contacts had an index case with an estimated viral load of ≥10 000 RNA copies/ml (Ct ≤ 24.4)."
#ViralLoad #InfectiousDose
Read 4 tweets

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