Thread by @aammar_tufail

Top 10 GitHub repositories for #RNAseq data analysis:

A thread 🧵:

Tuxedo Protocols: github.com/broadinstitute…
This repository contains a collection of protocols and tools for analyzing RNAseq data, including alignment, quantification, and differential expression analysis. (1/10)

RNASeq Workflow: github.com/gringer/RNASeq…
This repository contains a workflow for analyzing RNAseq data using the R programming language, including quality control, alignment, and differential expression analysis. (2/10)

RNAseq Analysis: github.com/hbctraining/In…
This repository contains a tutorial and example code for analyzing RNAseq data on a high-performance computing cluster using the O2 cluster at OICR. (3/10)

RNAseq Analysis with DESeq2: github.com/hbctraining/In…
This repository contains a tutorial and example code for analyzing RNAseq data using the DESeq2 package in R. (4/10)

RNAseq Analysis with EdgeR: github.com/hbctraining/In…
This repository contains a tutorial and example code for analyzing RNAseq data using the EdgeR package in R. (5/10)

RNAseq Analysis with limma-voom: github.com/hbctraining/In…
This repository contains a tutorial and example code for analyzing RNAseq data using the limma-voom package in R. (6/10)

RNAseq Analysis with sleuth: github.com/hbctraining/In…
This repository contains a tutorial and example code for analyzing RNAseq data using the sleuth package in R. (7/10)

RNAseq Analysis with tximport: github.com/hbctraining/In…
This repository contains a tutorial and example code for analyzing RNAseq data using the tximport package in R. (8/10)

RNAseq Analysis with Ballgown: github.com/hbctraining/In…
This repository contains a tutorial and example code for analyzing RNAseq data using the ballgown package in R. (9/10)

RNAseq Analysis with Salmon: github.com/hbctraining/In…
This repository contains a tutorial and example code for analyzing RNAseq data using the Salmon software. (10/10)

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