Moving in right direction to reverse outbreaks

Here's how:

At-home frequent rapid tests

10M/day ->

pool 2 ppl/test ->

20M ppl tested/day ->

Ea house tests 1x/wk ->

140M ppl tested/wk!! ->

Herd effects: R << 1 ->

RAPIDLY SLOWS SPREAD in US

1/

medtechdive.com/news/bidens-co…
This plan can work with only 10M paper strip antigen tests per day in whole of US

US Govn't can produce / fund these tests. Ship to participating households. 20 paper strip tests per household...

3 are different (but look same) and are for rapidly confirming positives.

2/
We do NOT need all people to "buy into" the program. These tests are used in private (think... next to toothbrush) and need only half of a community to decide to participate.

So if 50% of people don't want to - they don't need to. Not mandatory... the plan still works!

3/
Those households that do participate - they do so and use the test 1x/week (or for much faster community results - we get 20M tests/day and use 2x/week per house).

The point is to use them FREQUENTLY so people are likely to find themselves BEFORE they transmit to others.

4/
People have said these tests aren't sensitivity enough compared to PCR. This simply is not true. It's a misunderstanding. These tests ARE PLENTY SENSITIVE to catch almost everyone who is currently transmitting virus.

5/
People have said these tests aren't specific enough and there will be false positives... in most recent BinaxNOW rapid test studies, false positive rate has been ~1/400.

In this plan we add a few confirmatory tests... this will make the rate of false positives miniscule

6/
People have said we need to ensure reporting... NOT so. Here, we scale up testing first. Once we have a LOT of people tested per week (i.e. 140 million in this plan) then we have "single click" voluntary reporting. If you're positive, simple to report if you want....

7/
We can choose to have i) perfect reporting of a relatively small number of infrequently used tests that have slow turnaround times, OR ii) we can have imperfect reporting of a LOT of rapid tests

Choice (ii) will provide MORE data, not less, to public health authorities

8/
With nearly half of the country testing themselves weekly, incredibly... we do not need to rely on contact tracing... which is largely to figure out who to test and isolate (And it generally isn't working great).

Here the frequent rapid at-home tests ARE the intervention

9/
The tests ARE the intervention because they let people know they are infected WHEN they are infectious. And then people isolate for 10 days... or since that's burdensome for many... at LEAST until they have been negative for 48 hours... often < 10d.

10/
Some will say "Some people may not isolate"... yes... that's true - Some won't

But some won't with PCR/Test/Trace/Isolate as well. We don't handcuff people home

Here, this is more personal. They are testing themselves and SEE they are positive. Most POSITIVES will isolate

11/
This is NOT an "Entry Screen"... this is a "Public Health Screen"

The goal is NOT to stop every case. The goal is to stop every outbreak. Slow it down, get R << 1, and let the outbreak die out.

So far we've been trying to stop outbreaks by focusing on stopping cases..

12/
We need to shift our focus - away from thinking of this as a lot of medical problems, to thinking about this as one big public health problem

If we focus on stopping OUTBREAKS and not individual cases, we realize the full power of frequent rapid at home testing...

13/
In this program, it is not a big deal if the test misses someone - remember, 50% of people are choosing not to participate at all!!

Here, the goal is to suppress the outbreaks by driving R <<1. So that in weeks outbreaks have dropped dramatically and everyone becomes safer

14/
We see a TREMENDOUS example of the power of frequent rapid tests in Slovakia

Slovakia is testing ~50% ppl 1x/wk

In the first week alone the incidence of #COVID19 dropped ~50%!

We CAN do this in the US too!!

It takes a plan, strategy, coordination, and funding.

15/
Also -we must ensure income for anyone who needs to isolate. This is an absolute must.

We must have a LOT of high quality messaging - on web/tv/radio - like wartime messaging to make sure everyone understands the purpose, goals, how to test, etc

We can do this!

16/16
Here is a brief report about the Slovakia experience...

usnews.com/news/world/art…
Finally - to clarify - this is the plan I envision. I HOPE the Biden team will take it and run with it - or some version of it.
Also - Here is what would happen if we implemented this program! (Note, we mistakenly labeled this "surveillance" but it should be "screening".

This comes from a soon to be formally published pre-print:

medrxiv.org/content/10.110…
Here, we evaluated the economic return on investment of this plan had we started in June - Dec 2020.

The version described above is shown in panel C

Costs (all included) $28B
Would have increased GDP by $395B!
Would have saved >100,000 lives in 2020!

medrxiv.org/content/10.110…
Here is a news report on the efforts in Slovakia to drop incidence by 50% through widescale testing of their population in a short amount of time.

usnews.com/news/world/art…
And here is a paper we wrote describing why, for a program like this, we needn't worry about low analytical sensitivity and instead must prioritize sensitivity to detect infectious people....

nejm.org/doi/full/10.10…
If worrying that rapid tests miss a lot of people at start of infection - This paper tracked regular people over time to see if they turn positive. Note incredibly fast upswing in virus titers! Frequency, not sensitivity at the limit of PCR is needed.

medrxiv.org/content/10.110…
In other words, the time difference is minimal between when ppl 1st turn PCR pos and when they turn rapid antigen positive.

It is MUCH better to prioritize frequency and turnaround time over PCR type sensitivity b/c within hours of PCR turning pos, the viral load is sky high.
Oh. Also recognize that that plot of virus titers is a log scale. Every 3.3 Ct values is a 10-fold change. So 40-30 is a 1000x increase in virus titers.

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More from @michaelmina_lab

12 Nov
Today - I’m excited about not just antigen tests but introduction of at-home PCR-like tests like @HomodeusInc that are in works

These will serve so many purposes!

A major one is as gold-standard to confirm rapid antigen tests in the home/school/work w/out need for lab PCR

1/
These tests will bring the full power of a PCR lab into the home! Or School, or work, or small medical clinic

They won’t scale as high as antigen tests in terms of numbers, but it makes them optimal for them to serve, in part, as confirmatory tests for antigen tests

2/
False positives for example do happen (not frequently) in antigen tests. Confirming w a 2nd antigen test is one way forward

We want to be sure a +ve in a nursing home is true so a person is cohorted correctly (otherwise a potentially deadly mistake).

3/
Read 4 tweets
11 Nov
No No No No!!!

This paper represents what's going wrong w PCR testing!

Fig shows what is referred to as "False Negative Rate" of PCR since diagnosis

First glance you think - Whoa! SO many False Negatives!! BUT just.... no!

Please read on.

1/

medrxiv.org/content/10.110… Image
In this paper they define a “False Negative” as a PCR test that turns negative and then has another positive after it.
OK. So you’re probably thinking – yeah… that makes sense.

2/
To interpret this – you must ask what was the Ct value of the positives that came after and, if available, the Ct values of the false negatives that were missed….

Please read on, it’s important to understand this.

3/
Read 8 tweets
10 Nov
NEW on Rapid Tests!

Exceptional data that should help path to at-home highly accurate rapid tests

In over 860 samples tested w ⁦@AbbottNews⁩ BinaxNOW, only ONE was falsely positive! The Specificity was > 99.8%!

Why is this so important... and what else happened here

1/
First: here is the pre-print

medrxiv.org/content/10.110…

Which @apoorva_nyc covered briefly recently prior to the study release

nytimes.com/2020/10/15/hea…

2/
Second, we are so frequently talking about sensitivity bc no one wants to miss a case (will come back to this...) but what is equally or even more important when we consider frequent rapid antigen tests to suppress outbreaks with millions of them daily is SPECIFICTY

3/
Read 11 tweets
9 Nov
Wow! Good news! Pfizer press release says vaccine 90% effective at preventing symptomatic #COVID19!

If results hold, this is a very good efficacy for a vaccine, higher than I was expecting, by far.

From this, we can be cautiously optimistic!

1/

nytimes.com/2020/11/09/hea…
We do have to be cautious in interpreting these early results (from a press release) and we don’t know if same level of protection will persist long-term or if this is driven a lot by early effects more than robust immune memory

Nevertheless, this is a positive data point

2/
A couple of other items we will need to look out for

Even it protects from symptomatic disease, does it also protect from onward transmission?

The assumption is it would largely do this (and this would underpin herd immunity). But blocking transmission isn’t a sure bet

3/
Read 9 tweets
8 Nov
Frequent testing is needed to detect people early before infecting others. They must be highly scalable and for buy in, very convenient - i.e. home use

10M Rapid tests/day (i.e. antigen bc scalable / simple) can form the foundation to build back economy

theatlantic.com/health/archive…
Frequent tests alone won’t be the end all be all of this pandemic. Not by a long shot. These can greatly reduce odds of transmission - when used en masse, odds of onward transmission (i.e. Rt) can plummet.

To work, also need huge social/economic safety nets, + masks/distancing.
Although new administration will not officially start till January, we have options now. @JoeBiden and team led by @vivek_murthy can start now to engage manufacturing and begin planning/building these at scale w promise of payment once in office, as one example.
Read 5 tweets
7 Nov
On frequent wide scale rapid testing programs as foundation to slow #COVID19

“Total cost, in tens of billions, would still be far less than the many trillions of dollars of... continued economic loss”

True!

(One comment about the headline...
1/x)
forbes.com/sites/williamh…
Headline says as much as 1M Americans getting COVID daily. This is based on a back of the envelope calculation

We know that only 10% of cases may be diagnosed. So if we have 100k diagnosed daily, then the thinking is that x10 = 1 million

But this misses a crucial piece

2/x
Even though 100k+ new cases DETECTED daily, and we can multiply by 10 for underdiagnosis and get 1M... this is not NEW cases happening daily. This is prevalence of virus positivity daily....

To convert to daily INCIDENCE (Ie new infections daily) takes another step

3/x
Read 6 tweets

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